MmuINT0179868 @ mm9
Intron Retention
Gene
ENSMUSG00000079573 | Zfp783
Description
NA
Coordinates
chr6:47895882-47899018:+
Coord C1 exon
chr6:47895882-47895961
Coord A exon
chr6:47895962-47898892
Coord C2 exon
chr6:47898893-47899018
Length
2931 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GCATTGCTTTGTGTTTCTAGGTA
3' ss Score
9.43
Exon sequences
Seq C1 exon
AGTGGGCCAAGCTGGAGGACTGGCAGAAGAGGCTCGACAAGCATGTGATGGGGGCAGCTATGAGATGCTCGTTTCCCTGG
Seq A exon
GTGAGGCTGTGTAAGACCCCCTTTCGGGGATCCCCACTCTAGTATCAGGAGTGAGAGAGCACCCAAAGAAACACGAGGACCCATCTTGCTGTAATCACATGAGGCAGTTTAATGACGGAGCTCCGGACCGACATGCATCTCACATAGGAGATAATGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGGGTGAGGGGCTTAGGGGTGTGGGATTCAGCATAGCGACACACTATTGGCTTATTCAAACATTAACAGAAAGATTACATGTCAGCAAAAGGGCATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTTCACATAGCAACCAGTTGATGTATGACTTTACCCAGCGTCAAGGGGCAGTAGACAGAGGGGAGGTTCTGGCCAGGTGGTGTTGACCCAGAAGATAGCCCTGCTTGTCCTTGCATTTTTTTCATTTTTACAGTCAAGCTGTTCTTAGGAATGTCTTAACAACAGCCCTGTCTGTTCTGCTTTGTTCTCAGCCCCAGGCTGCGGGCTCATAGACAACTCTTTTACATGAATCACAGGTTACAAAATCTCATTTTCCTTCAGCTGCAGAGGAATACCTGGGCTTTCATCCTACAATGGCTTCCTGCTGTCTTTGCTTTTGCTTTAGGCAGCCAGACTCAGATTTTTCTCCATGCCCTCCCCATTGTGTATGCAGATTATGCCATCTCCAAACCGGTCATTCTCACCCAGATAGAGAGGGGAGAAGAGCCTTGTCCTGCAGGCCCCTGGGGCCAGGAGAAGGGGGGTGAGGAGAAGACAATATGTCAAAGGAAACCAAACACCAGTAAGTATTGGTACATCCTGAGACTGCTGGGGCAAAGTGAACAACAAACTGCTTTCCTGGGTAGACTGGACCATTTTGGAGCTGGAAAAAGCCCCTTACCCAGAGCTGGCTACACTTTGTCTGCGGCTTCTCTGAGCAGGAGTAAAGAGAAGGCTTCTCCTTAGAACTGTAAGGATTCTCCTCTGTATAGGAGGCACCAGCACAAAAGGGATGGCTGTGAGGTCAGAGGTGGCAAATGGAGATCAAGGATATAATAGGCATCTTCTGAGTGAGTGGATGGTCAGTTATGGCAAAGCATCTACTTTGTGCCACCTGCAGTGGTACCCATGCCATCTGCCATCACTGTTGTTCAGCTGACAGCAGCAGGAGACTGCAGATGCTCTTCTGCTTCTCTCTGGGATGGATCCTTGGGGGACAAGGCTAGGACTGCTCTGCAGCCAGTGTTTAACAATGACTCCTCTGGGGGTTGGTGAGGAGGCTCGGTGGTTAAGAGCACTGACTGTTGTAGCAGGGATCATGTTCAGTTCCCAGCACACACATGGCAACTTAGAGCTGGCCTTAACTCCAGTTTAGGTAATCTGGTGCCCTCTTCTGGCCTCTGTGGGCAGGAGTCATGGATACATGAAAGCAAAACACTCATATTCTCCCTTTCCCACACACATACAAAATTATTTACTTATTTTATTTTTGGTTATTTAATTCAGAGTCTCACTATTAGGGAGCTCTGACTATCCTGGAATTCACTATGTAGGCCAGGCTGGCCTTGAACTCATGGAGATCTGCCTGTTTCTTTCTCCCAAGTGCTAGAATTAAAGACCTGTGCCACCATGTTGGCAATAAAATAACTATATCTTTAAAAATATTTAGGGCTGGTAAGATCGCTCAGTGGTTAAGAGCACTGACTACTCTTTCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACGCCCTCCTCTGGAATGTCTGAAGACAGCTACAGTGAACTTATATATAACAAAGTAAATAAATCTTTATATAAAAAAATATTTAAACATAACCCAAAGTAGAACAGGACAGTAATCATTGTCACTGATCTTCAGGGGTGAGCTTTTGGCAAGCCTAGGTTATAAGGTGAGACCTTGTATCAAAGAGAGAAGAAAGGAAAAAAAAATCAGTAATAGAAATGTACTACCCGTCTCTTTCTAGACATAACCACAATATCATCACCCACCCACAGAAAATTATCTAACACCTGGTCCTTATTTCTGTTTTCAGTAGGAACATGGATCTTAACTTTAATAACCCAAAGTCCACATACTGCACTTGGTTTATGTCTTTTAAATCTATATAAAAAAAAAAAAACTCCATCCAAGTCCACCCACATTTTCAACAGTTTTACTGAGGTGTAATTTATGTACCATAGAATCCACCTATTAAAGTATGACCCTAACTCCTCAAGATCTGAGATGGGAGGATTGTGATCTAAAAAAACCCCAGACAAATAGGAAAGAATCAAGAGTTCATGTTTAAGCAGGGTCTATAGAACAGGCTGTAATCCAAGCTATTCTGGGCACAGGAGACTCATGGGTCAGAGCCTGCTTAGTCTACAGAATGAGTTCAAGGCCAGCCTGGGCAACTTAGTGAGAACTTGTATCAAAATTTAAAAGTGAGCCGGCCATGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAAGCCAGCCTGGACTACAAAGTGAGTTCCAGGACAGCCAAGGCTACATAGAGAAACCATGTCTCGAAAAGACAAAAAACCAAAAAACCAAAAAAAAAATAATAATAATAATAAAGTGAAATTAGAGCTGGTGAGATGGCTTAGCAGGGAACAAGGACATGTGAGAGACACAAACACACAAAAATAGGCTTTAGACAAGAATTGAGCTGCAGGCAGTGGGCATGGCCACTGTATCTGTATATTCTGTCTTTGGTCTATAGCCTAGAATCCCAGAGACTCTTACTGTGGTCCTGGAGTCACTGGCCTCCTGTCTGCGAGACCTTGGTATTGTGCTCAATGGCATTGCTTTGTGTTTCTAG
Seq C2 exon
GTATTTCTCTGAGTCCAGAGCAGGCCCCAAGTCCAGCTAGCCCTGCCCAGGAGGAACTGAATCAAAGGCAGACACCTGAGCAGCAGCAAGAGGAAGCAACCATGATTCCACCTGAGCCAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079573-Zfp783:NR_027963:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: