MmuEX0053613 @ mm9
Exon Skipping
Gene
ENSMUSG00000072653 | Zfp783
Description
zinc finger protein 783 [Source:MGI Symbol;Acc:MGI:3040704]
Coordinates
chr6:47895882-47899018:+
Coord C1 exon
chr6:47895882-47895961
Coord A exon
chr6:47896661-47896789
Coord C2 exon
chr6:47898893-47899018
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCATTGTGTATGCAGATT
3' ss Score
8.69
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AGTGGGCCAAGCTGGAGGACTGGCAGAAGAGGCTCGACAAGCATGTGATGGGGGCAGCTATGAGATGCTCGTTTCCCTGG
Seq A exon
ATTATGCCATCTCCAAACCGGTCATTCTCACCCAGATAGAGAGGGGAGAAGAGCCTTGTCCTGCAGGCCCCTGGGGCCAGGAGAAGGGGGGTGAGGAGAAGACAATATGTCAAAGGAAACCAAACACCA
Seq C2 exon
GTATTTCTCTGAGTCCAGAGCAGGCCCCAAGTCCAGCTAGCCCTGCCCAGGAGGAACTGAATCAAAGGCAGACACCTGAGCAGCAGCAAGAGGAAGCAACCATGATTCCACCTGAGCCAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072653_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.841 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGGAGGACTGGCAGAA
R:
CCTGGCTCAGGTGGAATCATG
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: