HsaEX0074362 @ hg19
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148963910-148975618:+
Coord C1 exon
chr7:148963910-148964036
Coord A exon
chr7:148964188-148964313
Coord C2 exon
chr7:148975490-148975618
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTGTTCTGTGCACAGATT
3' ss Score
9.1
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq A exon
ATTATGCAATCTCCAAACCAGACATCCTCACCCGGATAGAGAGGGGAGAGGAGCCTTGTCTTGACCGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACGTCCAAGGATGATGGGCACTG
Seq C2 exon
GCCTCCCTCCGTATCCAGAGCACCTCACCAGCCCACTTAGCCCTGCCCAGGAGGAGCTGAAAGAAGGGCAGGCCCCCAAGCAGCAGCAGGACTCAGAGGCGAGAGTGGCCCCAGCCGGGCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'4-7,'4-3,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.488 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCGTGACCTTCGATGAT
R:
CACTCTCGCCTCTGAGTCCTG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)