HsaEX0074362 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149266335-149297302:+
Coord C1 exon
chr7:149266335-149266730
Coord A exon
chr7:149267097-149267222
Coord C2 exon
chr7:149297051-149297302
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTGTTCTGTGCACAGATT
3' ss Score
9.1
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
ATTATGCAATCTCCAAACCAGACATCCTCACCCGGATAGAGAGGGGAGAGGAGCCTTGTCTTGACCGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACGTCCAAGGATGATGGGCACTG
Seq C2 exon
GTTCCCATGATCAGTGGTGAAATATAGTGATTTTCACCTGTGCTTCCATTCTGAAGTTCTGGAAAGAAGTACTGGATGGACTGAAGTCCAGGACAACGTCCCAAAGAAAGGCAGAGTCCAGGTAGGCTTGGAGGACCAAGCCCTGGATGAGCACTGGAGGGCAGAGGCCTCAGTGTCCAGCACTGTGCCCTGCACATGGAAAGCCCCTACGTTTGTGGAATGAATGAATAATAAAAATGTTTTCATAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946_MULTIEX1-2/20=C1-C2
Average complexity
C3
Mappability confidence:
89%=100=93%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.473 C2=NA
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- HsaALTA1056204-1/2
- HsaALTA1056204-2/2
- HsaALTD0007511-1/2
- HsaALTD0007511-2/2
- HsaALTD0007513-2/4
- HsaALTD0007513-4/4
- HsaALTD0007514-1/2
- HsaALTD0007514-2/2
- HsaALTD1054236-1/3
- HsaALTD1054236-2/3
- HsaALTD1054236-3/3
- HsaEX0074358
- HsaEX0074359
- HsaEX0074360
- HsaEX0074361
- HsaEX0074363
- HsaEX1045494
- HsaEX1045495
- HsaEX1045496
- HsaEX1045497
- HsaEX1046512
- HsaEX6011149
- HsaEX6011151
- HsaEX6011152
- HsaINT0188391
- HsaINT0188392
- HsaINT0188393
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGAGAATGTGGAGAAC
R:
CAGTGCTCATCCAGGGCTTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development