HsaEX1045494 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149287565-149290038:+
Coord C1 exon
chr7:149287565-149287776
Coord A exon
chr7:149289402-149289457
Coord C2 exon
chr7:149289938-149290038
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCAGACCTGGGTTTTTGTAGCTA
3' ss Score
3.91
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACTGGCATTGCGGACTGACCTCCAGGGAGAGGCCCAGATCTGATCTGCAGAGATCTCCCTTCCGGCTATCGTGGCTGCTGTTCAGGTGGTGGAGAAGAAGATGGAACCCCAGGCTGCCTGGCTACAGAGCCTGGAGGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGGAG
Seq A exon
CTACCCCACTCCGAAGCTCTCCTGCGTGAACCTGGAATTCTCACTGCTTTGGGCAG
Seq C2 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946_MULTIEX1-10/20=7-12
Average complexity
C3
Mappability confidence:
88%=100=89%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGAGCCTGGAGGGATGC
R:
TGCCTGTCTCCTTTCTCCACT
Band lengths:
142-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains