HsaEX6011151 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149266335-149297302:+
Coord C1 exon
chr7:149266335-149266730
Coord A exon
chr7:149278399-149278527
Coord C2 exon
chr7:149297051-149297302
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACTGATTTACATTCTCCAGGCC
3' ss Score
6.07
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GCCTCCCTCCGTATCCAGAGCACCTCACCAGCCCACTTAGCCCTGCCCAGGAGGAGCTGAAAGAAGGGCAGGCCCCCAAGCAGCAGCAGGACTCAGAGGCGAGAGTGGCCCCAGCCGGGCCAGAAGCAG
Seq C2 exon
GTTCCCATGATCAGTGGTGAAATATAGTGATTTTCACCTGTGCTTCCATTCTGAAGTTCTGGAAAGAAGTACTGGATGGACTGAAGTCCAGGACAACGTCCCAAAGAAAGGCAGAGTCCAGGTAGGCTTGGAGGACCAAGCCCTGGATGAGCACTGGAGGGCAGAGGCCTCAGTGTCCAGCACTGTGCCCTGCACATGGAAAGCCCCTACGTTTGTGGAATGAATGAATAATAAAAATGTTTTCATAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946_MULTIEX1-5/20=C1-C2
Average complexity
C3
Mappability confidence:
90%=100=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
NO
C2:
NA
Main Skipping Isoform:
ENST00000378052fB8236
Other Skipping Isoforms:
NA
Associated events
- HsaALTA1056204-1/2
- HsaALTA1056204-2/2
- HsaALTD0007511-1/2
- HsaALTD0007511-2/2
- HsaALTD0007513-2/4
- HsaALTD0007513-4/4
- HsaALTD0007514-1/2
- HsaALTD0007514-2/2
- HsaALTD1054236-1/3
- HsaALTD1054236-2/3
- HsaALTD1054236-3/3
- HsaEX0074358
- HsaEX0074359
- HsaEX0074360
- HsaEX0074361
- HsaEX0074362
- HsaEX0074363
- HsaEX1045494
- HsaEX1045495
- HsaEX1045496
- HsaEX1045497
- HsaEX1046512
- HsaEX6011149
- HsaEX6011152
- HsaINT0188391
- HsaINT0188392
- HsaINT0188393
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGAGAATGTGGAGAAC
R:
CAGTGCTCATCCAGGGCTTG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains