HsaEX6011149 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149289938-149293492:+
Coord C1 exon
chr7:149289938-149290083
Coord A exon
chr7:149292211-149292308
Coord C2 exon
chr7:149293377-149293492
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTCTCGAAACGGTTTCCAGGGC
3' ss Score
4.87
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTGGTGAGTCCCTCAGGGTGTGGGCCTGGGCCTCTCCACCTGCATCTG
Seq A exon
GGCCCTGGTTAATGGTGGAGCCAGCCTGGTGTGTGGCAGCCAGGTCGGGCTGGTGTCTTCAGAGTGGCTGTGTCAGAAGGGCCTCGTGTATGACAGAA
Seq C2 exon
ACGCAGGCCAGCTGGAACGTCCCCAGGCGTTCTGTCCTGGATCAAGCAAGAGGAAGGGGCAAGTGGGAGGAGCCAGCAGGGCCCACAGGAGACCACTGTGGCACACCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946_MULTIEX1-14/20=12-15
Average complexity
C1
Mappability confidence:
82%=100=83%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000481519fB8235
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTGGCACCAGTGGAGAA
R:
CTTGATCCAGGACAGAACGCC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains