HsaEX6011149 @ hg19
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148987029-148990583:+
Coord C1 exon
chr7:148987029-148987129
Coord A exon
chr7:148989302-148989399
Coord C2 exon
chr7:148990468-148990583
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTCTCGAAACGGTTTCCAGGGC
3' ss Score
4.87
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTG
Seq A exon
GGCCCTGGTTAATGGTGGAGCCAGCCTGGTGTGTGGCAGCCAGGTCGGGCTGGTGTCTTCAGAGTGGCTGTGTCAGAAGGGCCTCGTGTATGACAGAA
Seq C2 exon
ACGCAGGCCAGCTGGAACGTCCCCAGGCGTTCTGTCCTGGATCAAGCAAGAGGAAGGGGCAAGTGGGAGGAGCCAGCAGGGCCCACAGGAGACCACTGTGGCACACCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'15-16,'15-15,18-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=0.000 C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGAAAGGAGACAGGCA
R:
TGCCACAGTGGTCTCCTGTG
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)