HsaEX0074360 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149289938-149292308:+
Coord C1 exon
chr7:149289938-149290083
Coord A exon
chr7:149291689-149291745
Coord C2 exon
chr7:149292211-149292308
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTGTTGGATGTTTCCACAGGCA
3' ss Score
8.89
5' ss Seq
TAGGTACGG
5' ss Score
7.82
Exon sequences
Seq C1 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTGGTGAGTCCCTCAGGGTGTGGGCCTGGGCCTCTCCACCTGCATCTG
Seq A exon
GCAGGCTGTTGCTGCCAGAATTCTAGAAGCAGTGTAAACGGGCTGCTCATTCATTAG
Seq C2 exon
GGCCCTGGTTAATGGTGGAGCCAGCCTGGTGTGTGGCAGCCAGGTCGGGCTGGTGTCTTCAGAGTGGCTGTGTCAGAAGGGCCTCGTGTATGACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946_MULTIEX1-13/20=12-14
Average complexity
C1*
Mappability confidence:
84%=100=85%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000481519fB8235
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTGGCACCAGTGGAGAA
R:
GCTCCACCATTAACCAGGGC
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development