HsaALTD0007513-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149293755-149294412:+
Coord C1 exon
chr7:149293755-149293835
Coord A exon
chr7:149293836-149294016
Coord C2 exon
chr7:149294380-149294412
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
TCTGTGTCCTTTGCCTGCAGAGA
3' ss Score
10.82
Exon sequences
Seq C1 exon
CATGGTGCTGGGCGCTGCAGGGGCTCATTAATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGAACACAGACACA
Seq A exon
GTACACGGTGGGAAGGGGCACTTCCATGTCTGCAGCCAGAGAGCCCTTTCAGAATCTGACCCAAAAGATGGCCAGTATTCTAAGAAAAAGCACATATGCTTACGATGTGCAAACAGCTGAAGGTGTTCTTTCAACTATAGTAAAAGGGGTGTCTCGGTGGCCACAGGCGGCCCAGATGAAG
Seq C2 exon
AGACCTGTCTGGGCCGCAGAGAGGAGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-34-40,35-40,36-40,37-40-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGGGCTCATTAATGCA
R:
CTCCAGACTCCTCTCTGCGG
Band lengths:
100-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains