HsaEX0074363 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149267097-149278527:+
Coord C1 exon
chr7:149267097-149267222
Coord A exon
chr7:149278136-149278248
Coord C2 exon
chr7:149278399-149278527
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCCTTAAAATGCCAGATT
3' ss Score
4.78
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATTATGCAATCTCCAAACCAGACATCCTCACCCGGATAGAGAGGGGAGAGGAGCCTTGTCTTGACCGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACGTCCAAGGATGATGGGCACTG
Seq A exon
ATTCTGTCATGACCTGCCTGGCGATCATTACCGTGATTTCCTGTCTGCTGAATTCCTGTGCTGCAGTTTCCTTCTGTGGGACATGAGGCTTTAGACTGGAATCTAGCTGCCAG
Seq C2 exon
GCCTCCCTCCGTATCCAGAGCACCTCACCAGCCCACTTAGCCCTGCCCAGGAGGAGCTGAAAGAAGGGCAGGCCCCCAAGCAGCAGCAGGACTCAGAGGCGAGAGTGGCCCCAGCCGGGCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946_MULTIEX1-4/20=2-5
Average complexity
S
Mappability confidence:
90%=100=92%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000378052fB8236
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATGCAATCTCCAAACCAGACA
R:
CCACTCTCGCCTCTGAGTCC
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development