HsaEX0074363 @ hg19
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148964188-148975618:+
Coord C1 exon
chr7:148964188-148964313
Coord A exon
chr7:148973443-148973578
Coord C2 exon
chr7:148975490-148975618
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTCTTTGTTGTAGGAA
3' ss Score
11.81
5' ss Seq
CCCGTACGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATTATGCAATCTCCAAACCAGACATCCTCACCCGGATAGAGAGGGGAGAGGAGCCTTGTCTTGACCGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACGTCCAAGGATGATGGGCACTG
Seq A exon
GAAGGATCCAAAGATGAAACTTCAGAGGATGATCCACTGAAATTTTTAGGATCTGCTGATGAAGCAACCGTCTTTAGGCTTGTCATGAAAGCAACATTTTTAGGGGCAGTGTAACCCGTTGGTTTATAACTCTCCC
Seq C2 exon
GCCTCCCTCCGTATCCAGAGCACCTCACCAGCCCACTTAGCCCTGCCCAGGAGGAGCTGAAAGAAGGGCAGGCCCCCAAGCAGCAGCAGGACTCAGAGGCGAGAGTGGCCCCAGCCGGGCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'5-7,'5-4,6-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATGCAATCTCCAAACCAGACA
R:
CCACTCTCGCCTCTGAGTCC
Band lengths:
234-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)