HsaALTD0007514-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149294540-149297301:+
Coord C1 exon
chr7:149294540-149294901
Coord A exon
NA
Coord C2 exon
chr7:149297051-149297301
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GTAATGATATTCCACTCTAGGTT
3' ss Score
7.57
Exon sequences
Seq C1 exon
GCCCCCCGAGCCAGGCTGAGCCAGCCGCTAGGGGCACGGAGCAGTGCCCACCTTGCGCCCAGTGTGGCCAGAGCTTCGGCCAGAAGGAGCTCAGTGCGCCGCACCAGCGCGTGCATCGTGGCCCCCGGCCTTTCGCTGGTGCTCAGTGTCCCAAGAGCTTCACGCAGCGGACCACCCCCGCCAGCCACCGTCGGGCGCACGTGGCCGAGTGCACCTACACCCGCGCCCAATGCGGCAAGACCTTCCTCCAGCAGTCGACGCTCACACCCACTACTGCGCGCACATCAGGGAGAAGCCCTACGAGTGCGCCAAGCTCTTTGGCCGCCTGTCCACGCTGCTGGAGCACCGGCACATGCACACGG
Seq A exon
NA
Seq C2 exon
GTTCCCATGATCAGTGGTGAAATATAGTGATTTTCACCTGTGCTTCCATTCTGAAGTTCTGGAAAGAAGTACTGGATGGACTGAAGTCCAGGACAACGTCCCAAAGAAAGGCAGAGTCCAGGTAGGCTTGGAGGACCAAGCCCTGGATGAGCACTGGAGGGCAGAGGCCTCAGTGTCCAGCACTGTGCCCTGCACATGGAAAGCCCCTACGTTTGTGGAATGAATGAATAATAAAAATGTTTTCATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-40-46,41-46-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCTTCCTCCAGCAGTC
R:
CTCTGCCCTCCAGTGCTCATC
Band lengths:
293-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development