HsaALTA1056204-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149293377-149293835:+
Coord C1 exon
chr7:149293377-149293492
Coord A exon
NA
Coord C2 exon
chr7:149293755-149293835
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATGAACTTGTCTGTAGGCAGCAT
3' ss Score
-0.29
Exon sequences
Seq C1 exon
ACGCAGGCCAGCTGGAACGTCCCCAGGCGTTCTGTCCTGGATCAAGCAAGAGGAAGGGGCAAGTGGGAGGAGCCAGCAGGGCCCACAGGAGACCACTGTGGCACACCTGTGCTCAG
Seq A exon
NA
Seq C2 exon
CATGGTGCTGGGCGCTGCAGGGGCTCATTAATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGAACACAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-33-39,33-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGAGGAAGGGGCAAGT
R:
TGCATTAATGAGCCCCTGCAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains