BtaEX0041541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002445 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr4:113142486-113148550:+
Coord C1 exon
chr4:113142486-113142614
Coord A exon
chr4:113147147-113147275
Coord C2 exon
chr4:113148329-113148550
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACTGATTTGCATTCCCCAGGCC
3' ss Score
7.04
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATTATGCCATCTCCAAACCAGACATCCTCACCCGGATGGAGAGGGGAGAGGAGCCTTGTCCTGAAGGCCCGTGGGGCCGGGAGGAAGGGAACGAGAGAGAGGAAGTGTGCCCCAGGAGGCCAGGTGCAG
Seq A exon
GCCTGCCTCCGTACCCAGAGCAGATCCCCAGCCCGGTGAGCCCTGCCCAGGAGGAGCCAAAAGAAGGTCAGGCCCTGGAGCACCAGCCAGACTGGGAAACAAGGGTGACCCCACCGGAAATGGGCACTG
Seq C2 exon
GGCCCCCAGCCAGTGTCAGCATTTTGTCTTCAGTTAAACGGGAGGAAGACTCTTCAGATGGGGAGTCACCAACCTGCCCTCCCAGGGACATCCTGCCCAGCTTGGGGCCAGGTGAGTGAAGGGAGGAGGCCCCATGGCCTCAGCAGAGCCTCGGGAGACCTCGGGGCCCCTCTGGGAGAGGGGGCGGGCTTGCATGATGGACCTGGGGAGCGCTCTCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002445_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=NA C2=0.986
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCAGACATCCTCACCCG
R:
CTCCTCCCTTCACTCACCTGG
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development