HsaALTD0007511-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149287565-149290038:+
Coord C1 exon
chr7:149287565-149287776
Coord A exon
chr7:149287777-149287916
Coord C2 exon
chr7:149289938-149290038
Length
140 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TGCCCTTTTCCTCCCCACAGGCC
3' ss Score
14.27
Exon sequences
Seq C1 exon
GACTGGCATTGCGGACTGACCTCCAGGGAGAGGCCCAGATCTGATCTGCAGAGATCTCCCTTCCGGCTATCGTGGCTGCTGTTCAGGTGGTGGAGAAGAAGATGGAACCCCAGGCTGCCTGGCTACAGAGCCTGGAGGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGGAG
Seq A exon
GCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGTGGCTGGGGAACGTGGAGAACCTGCTGTGCAACAGGAACTTCTGGATCCTGCAGTTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-20-28,21-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGCCCAGATCTGATCT
R:
GTTGCCTGCCTGTCTCCTTTC
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development