HsaALTD0007511-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148984656-148987129:+
Coord C1 exon
chr7:148984656-148984867
Coord A exon
chr7:148984868-148985007
Coord C2 exon
chr7:148987029-148987129
Length
140 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TGCCCTTTTCCTCCCCACAGGCC
3' ss Score
14.27
Exon sequences
Seq C1 exon
GACTGGCATTGCGGACTGACCTCCAGGGAGAGGCCCAGATCTGATCTGCAGAGATCTCCCTTCCGGCTATCGTGGCTGCTGTTCAGGTGGTGGAGAAGAAGATGGAACCCCAGGCTGCCTGGCTACAGAGCCTGGAGGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGGAG
Seq A exon
GCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGTGGCTGGGGAACGTGGAGAACCTGCTGTGCAACAGGAACTTCTGGATCCTGCAGTTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-11-13,12-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.791
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGCCCAGATCTGATCT
R:
GTTGCCTGCCTGTCTCCTTTC
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)