HsaINT0093509 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:148984656-148986548:+
Coord C1 exon
chr7:148984656-148984867
Coord A exon
chr7:148984868-148985521
Coord C2 exon
chr7:148985522-148986548
Length
654 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CAGGCAACTTGTACTTCCAGGTG
3' ss Score
6.05
Exon sequences
Seq C1 exon
GACTGGCATTGCGGACTGACCTCCAGGGAGAGGCCCAGATCTGATCTGCAGAGATCTCCCTTCCGGCTATCGTGGCTGCTGTTCAGGTGGTGGAGAAGAAGATGGAACCCCAGGCTGCCTGGCTACAGAGCCTGGAGGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGGAG
Seq A exon
GCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGTGGCTGGGGAACGTGGAGAACCTGCTGTGCAACAGGAACTTCTGGATCCTGCAGTTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAGGTACAGGAGCTGGGTGTAGGAGGAGAGGCCCTGCCTGGACTCTGTAGGGTGGCCATATGCATAGCGTCGCCACAGCAGCATACCCTTGGCTGCTGAAGCCTGACCTCTGGGCGTCCAAGGCAGTCACTAGTTGACTTTAAAGGGCTTGAAAAATGTCAGAAGAAAATTGTGACACAGAAAAATGTCTGCTTTGGAAGATGGAATGGGGTTTGTTGGGAGAGATATGGTTGTGCAGCAGTGGTTGTACATGGTCTCTGAGAGTGAGGACTGGCACAAGTAGGAGATATGTGTGCCTGGGAGAGGGGAGAACCCAGGAGCCCCGATCCTAGATCCCATTAGTCACTGGTTCTGCCCTTTAGCTGAAGGCAGTGTGATGGAGTTGAGTTTGCATTTGCTTAGTAGTTTGGCCTGCGATGCCCTCTGCTTCGGGGGAAGGGAGAGGGGACGAGTTGGTTTTGGCTGCTCCGTGAAATGGTTGTTATTCATGGTGGGTGCAGGCAACTTGTACTTCCAG
Seq C2 exon
GTGCCTGTGACTCCTGAAGACACGGTCGGGTATTTCTCAGAGCAGCAGGGTGGCGGCCTGGAGGACTCATAGAAGGAGTTCTGCAAATGTGTTGTGAAGGGGAGCTGCGACACCCTGAGCTTCCTGGGTGAGAGGCTGGCCTCTGGGGGCCTCCACACCTTGGTTTTACTCCTTTATTCAATCACATGAGACTCCTGAATCTCAGAGCAGGAAGCATGTGGAGATCATTTCTTCAGCCCTCTGTCTTCAGGCAGGTAGAAGGTATCTGTCATTCTCATTTTGAAGTTTTATGTAATGAAATGCAGAGGTTATGTGACTTGTTCCAGATTTCTTGGAGTAAATAAACTGGAATCTGCTCCTCGCTGTCCTGCCCTTCGCGTGGTGCCAGAGGCAGCTCCTGCGTGCACACCTGTGGCTCACCAGCCTATCTGCTCCTGGGGAGCTGGGGCCTCCCCTGGTTTACATCTGCATCTCTAGGACTCCCACGCTGCACTCTGCACACTGAGTTCTCAGGAGATTCCTGCTGAGCAAAGAAGGATGAATTGTAGGCCTGCTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTTCCCAGGCTGGAGTGCAATGGCGTGATCTCAGTCACCACACCCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGTTTCCTGAGTAGCTGGGACTACAGGCATGGGCCACCACACCCGGCTCATTTTATATTTTTAGTAGAGACGGGGTTTCTCTATGTTGGTCAGGCTGGCCGCGAACTCCCAACCTCAGGCGATCCTCCCGTCTCGGTCTCCTAAAGTGCTGGGATTACAGGAGTGAGCCACCAGGCTTGGCCAGGCCTGCTTTTAAGGATGCCCCAGGTCCAGAAAATCAGGGCCAGGCCTGGGAAGTTCGCTCCTTCAGGCAGGTGTGCGTCTTCGTGTGAGACTTGATCAGACCTGGGTTTTTGTAGCTACCCCACTCCGAAGCTCTCCTGCGTGAACCTGGAATTCTCACTGCTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC155060:NR_036573:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCAGGTGGTGGAGAAG
R:
CCACATGCTTCCTGCTCTGAG
Band lengths:
356-1010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)