RnoINT0168767 @ rn6
Intron Retention
Gene
ENSRNOG00000026874 | Zfp956
Description
zinc finger protein 956 [Source:RGD Symbol;Acc:1304879]
Coordinates
chr4:77625850-77627638:+
Coord C1 exon
chr4:77625850-77626203
Coord A exon
chr4:77626204-77627511
Coord C2 exon
chr4:77627512-77627638
Length
1308 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GGGGACTTGTGTTCTTCCAGGTT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GACTGGCATATGGGGCCTGACCTCCAACAACAGGCCCAGATCCAGTGCACAGAGACCTCCCTTTTAGCTCTCCTAGCTGCTATTCAGGCAGTGGAGAAGAAAACAGAGTCCCAGGGTATCCACCTTCAAAATTTGGAAGTGCGGACAGGATCAGCCGAGAAGAAGCTGACTGACTTTGAGAAGACAGCTGTGGAGCTCAGCAGCCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGCGACGGCTGGAGAACCTGGAGAACCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTTCCTCCCAGCAGCAAGGATGAAGCCCCCAAG
Seq A exon
GTATTCATAGAGTGAGGAGAGGCCTCCAAATCTGAGTTCTAGTGCTTAACACTAGTCACTATGGACTTTAAGGAGCTTTAAAAAATGTCAGAAGTACAGTGTGACATTGGAAAGGTAACAGAGTGGGTTGTTGGGAGGGATATGTTTAGGCAGCAACAGTTGTATTATTCTAAAATGACCCTTTTTTTTTCTTATTGAAAAGAATTTTGCTAGGTGGTGGTAACCTTTAATCCCAGTACTTGGGAGGTAGATGTAGTCTGATCTCTGGGTTTGAGGCCAACCTGGTCTATAGAGTGAGTTCCAGGGCAGTCAGGGCTACACAGAGAAATCTGTCTTGATTAGCCAAAAAATGTTTTCACCAAGCATGGTGGTTCATGCCTTCAGAGGTAGGCGGATCTCTGTGAGTTGGTGGTCAGCCTAGTCTACATAGAGAGCTCCAGGATAGCCAGGACTATAAGGGAGACCCTGTCTCAATAAATAAATAAATCAATAAATAGAAAAGAGAAAAAGAGGTGCGGGAGAGATTGCTCAGTGGTTAAGAGCACTGACTGGTCTTCTAGAGGACCGGGGTTCAATTCCCAGCATCTAATGTCAGTTCACAACTGTCTGTGACTCTAAGATCTGACACCTCACACAGATGTACATGCAGGCAAAACAAGACAAAGTCTACAAAAATATCATTGAGCCTGCTTTATGTTGGCCAACTACTCCTCGATATGGGGAGCATGTTATTGACTGCAGATAGCTTTTTAGTTAGAGATAGGAGCCCTTAACTACTTTCCTTTCTCAGTACTGGGACTCCGTCTCCCTTTCTTCCTCCTTTTTCCACAAAGATCCCTGAGCCTTCTGTGATGAAGACATTCCATTCAAGACTAAGTGCCCCAAAGTCTCTCACTCTCCACACATTGTCTATTGTGGGTCTCTGTGTTAGTTCCCACATACTACAGGAAGAAGCCACTCTTGATGGCTGAGCCAGGCAGATCTGAATCTCAGCCTGGTGTGGCCACTGGGGGCCCCCATAGAGAGTGTTTCTGAGGATGGGCAGCTGACCTACAGGAATGGAGGAGGGCTAAAAGGGAAGGCCCCAGAAAGACTTTTTGAGAGTGAGAACTGGTTTAAGTAGAGGAAATCAACAGAAAGCATCTCCATTCAGAAAAGATACAAGTGTGCACAGGCGCTAGAAGGACCATGTGCACCCGTCTTCCTTTCTATAAAAAATGTGGGCAGAAGCTAGCATTTAGTCCACGGTGCCCACAATTTTGAAAGCCGGTTTCTGAAGGGATGTGGGGGGGACTTGTGTTCTTCCAG
Seq C2 exon
GTTTCTGTGATTACTGAAGAGGTGACTGGGTGTTTCCCAGAGCAACAGGAAGGCAGCCCGGAAGACTGGCAAAAGGAGCTCTGTAAGCATGTGGCAAAGGAAAGGCGTGAGGTGCTGGGCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026874:ENSRNOT00000059263:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.488
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=69.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACAGAGACCTCCCTTT
R:
ACACCCAGTCACCTCTTCAGT
Band lengths:
344-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]