MmuINT0007039 @ mm10
Intron Retention
Gene
ENSMUSG00000045466 | Zfp956
Description
zinc finger protein 956 [Source:MGI Symbol;Acc:MGI:2141515]
Coordinates
chr6:47955817-47957602:+
Coord C1 exon
chr6:47955817-47956170
Coord A exon
chr6:47956171-47957475
Coord C2 exon
chr6:47957476-47957602
Length
1305 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GGGGACTTGTATTCCTCCAGGTT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GACTGGCATATGGGGACTGACCTCCAACAACAGACCCAGATCCAGTCTGCAGAGATCTCCCTTCTAGCTATCCTATCTGCTGTTCAGGCAGTGGAAAAGAAAACAGAGTCCCAGGCTGTCCACCTTCAAAACTTGGAAGTAAGAACAGGGTCAGCTGAGAAGAAGTTGGCTGACTTCGAGAAGACGGCCATGGAGCTCAGCAGCCAGCTGGAGGGCAAGTGGGCTGTTCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAACGGCGGCTGGAGAACCTGGAGAATCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTCCCCCCCAGCAGCAGGGATGAAGCCCCCAAG
Seq A exon
GTATTCATAGAGTGAGGAAAGGCCTCCAATCTGAATTCTAGTGCTTAATACAGTCACTATGGACTTTAAGGAGCTTTTAAAATTGTCAGAAGTACAGTGTGACATTGGGAAGGTAACAGTAGAATGGGTTGTTGGGAAGGGTATGTTTGGGCAGCAACAGTTGTCTTCTTCCAAAATGAGCTTTTTTTTTCCTTATTGAAAAAGATTATTTTGCTAGCACACACCTTTAATCCCAGCACTTGGGAGGCCGAAGCAGTCATATATCTGAGTTTGAGGCTAGCCTGGTCTATAGAGTGAATTCCAGGACAGCCAGGGCTACACAGAGAAATTCTGCCTTGAAAAACCAAAAAAATGTTTTCACCAAGTGTGGGTGGTGCATGCCTTCAGAGGTAGGCAGATCTCTGTGAGTTGGTGGTCAGCCTAGTTTATATAGAGAGCTCTAGGACAGCCAGGACTAGAGAGAGAGACCCTGTCTCAAAAAAAGAAAAGAAAAGAAAAAGAAAAGAGAAAAAGAAGGGCTGGATAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTTTGGAGGATGTAGGTTTAATTCCCAGCATCTAATGGCAGCTCACAACTGTCTGTAACTCCCAAGGTCTGAAACCCTCACATAGACGTACATGCAGGCAAAACAAGACAAAGTCTACAAAAATACCACTGAGTCTGTTTGATGATGGCCAATTACACCTGAAGCATGTTATTGATTGCAGATAGCTTTTTAGTTAGAGATAGGAGCCCATGACTACTTCACTTTCTCAGTACTGGGACTCCCATTTCCCTTTCTTCCTCCTTTCCCATAGATCCCTGAGCCTTCTGTGACGAAGACATTCCATTTAAGAATGAGTGCCCCAAAGTCTCTCACTCTCTCTACATTTTCCATTGTGGGTCTCTGTTAGTTCCCACATACTACAGGGAGAAGCCTCTCTGATGGCTGAGCGGGCACTGATCGGAGGCTCAGCCTGGTGTGGCCCTGGGGGTCCCCCGTGGAGAGTGCTTCTGAGGATGAGCAGCTGGCCTACAGGAATGGAGGTGGGCTAGAAGGGAAGGCCCAGGAAGACTGCTGAGAGTGAGAGCTGGTTTAAGTAGAGGAAGTCAACAGAAAGCATCTCCATTCAGGTCCCAAGGGAAGATACAAGTGTGCAGTGGAGCTAGAAGGACCCTGTGCACTTGTCTGTTTTTCTATAACAAATGTGGGCAGAAGCTAGCATTTAGTCAGAGGTGCCCTCAGTTTTGAAGGCTGGTTTCTGAAGGGGTGGTGGGGACTTGTATTCCTCCAG
Seq C2 exon
GTTTCTGTGACTACTGAAGAGGTGGCTGGGTGTTTCCCTGAGCAACAGGAAGGTAGCCCAGAAGACTGGCAGAAGGAACTCTGCAAGCGCGTAGCAAAGGAAAGGCGTGAGGTGCTAGGCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045466:ENSMUST00000101445:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=67.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCTGTCCACCTTCAAAA
R:
TCACGCCTTTCCTTTGCTACG
Band lengths:
354-1659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types