BtaINT0166031 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031106 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr4:113309292-113309797:-
Coord C1 exon
chr4:113309498-113309797
Coord A exon
chr4:113309374-113309497
Coord C2 exon
chr4:113309292-113309373
Length
124 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CCGTGTATTTCTCTGAGCAGGAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
ATTTCTCCCTGGACAATGGCAGCCACGATTCAGGCCATGGAGAGGAAGATTGAATCGCAGGCCGCCCGCTTGCTTTCCCTAGAAGGCCGAACGGGCATGGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAAAACCTGCTGAGGAACAGAAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGCGAGGCCCCCAAG
Seq A exon
GTAAGCCCTGGGCACCAGGGGTGGGACAGCCCACGGCCCTTGCCCGTTGGCGTGTGGGTGAGCCTGCGTGACCCTGTGGTTCCAGGTGCCCTTTGATGACGTGGCCGTGTATTTCTCTGAGCAG
Seq C2 exon
GAGTGGGGCAAGCTGGACGAGTGGCAGAAGGAGCTGTACAAGCACGTGATGAGGGGCAACTATGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031106:ENSBTAT00000018668:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(6.5=2.0)
A:
NA
C2:
PF0135222=KRAB=FE(87.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGACAGCCGTGGAGTTC
R:
GACCAGCGTCTCATAGTTGCC
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]