RnoINT0168628 @ rn6
Intron Retention
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77743665-77744175:-
Coord C1 exon
chr4:77743876-77744175
Coord A exon
chr4:77743747-77743875
Coord C2 exon
chr4:77743665-77743746
Length
129 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CTGTGTGTTTCTCTGATCAGGAG
3' ss Score
9.84
Exon sequences
Seq C1 exon
ATTTCTCCATGGACAATGGCAGCTACAATTCAGGCTATGGAAAGGAAAATTGAATCACAGGCTGCTCGACTACTTTCTCTAGAAGGTCGAACTGGGATGGCGGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAATCTGCTACGCAACCGAAACTTCTGGATCCTGCGGCTGCCCCCTGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
GTAGCCTTTGGGAGCCCTGGTGTGGTTAGCCTGAGGGTCCATGCCTGAGAGTGTGAGGGTGGGCGAGTATGACACTGGTTTCAGGTGCTCCTGACCTTTGATGACGTGGCTGTGTGTTTCTCTGATCAG
Seq C2 exon
GAGTGGGGCAAGCTGGAAGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064:ENSRNOT00000009247:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(3.3=1.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGACTGTGAGAAGAC
R:
TCGTAGTTGCCCCTCATCACA
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]