HsaINT0188277 @ hg19
Intron Retention
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:21948]
Coordinates
chr7:149191080-149191594:-
Coord C1 exon
chr7:149191295-149191594
Coord A exon
chr7:149191162-149191294
Coord C2 exon
chr7:149191080-149191161
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CCGTGTATTTCTCCGAGCAGGAG
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATTTCTCCGTGGACGATGGCAGCCACGATTCAGGCCATGGAGAGGAAGATTGAATCGCAGGCTGCTCGCCTGCTTTCCCTAGAAGGTCGAACCGGGATGGCCGAGAAGAAGCTGGCTGATTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGTCCCCTAAG
Seq A exon
GTAGCCCTGGGACGCCTTGGGGTGTGGGAGCCCAAGCGGCCAAACCCGTGAGCGTGTGGGTGAGCGAGTGTGACACTTGTGGTTCCAGGTGCCCGTGACCTTTGATGATGTGGCCGTGTATTTCTCCGAGCAG
Seq C2 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-ZNF746:NM_152557:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(6.5=2.0)
A:
NA
C2:
PF0135222=KRAB=FE(87.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGATTGCGAGAAGACAG
R:
GTAGTTGCCCCTCATCACGTG
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)