GgaINT0090908 @ galGal3
Intron Retention
Gene
ENSGALG00000004819 | ZNF767
Description
NA
Coordinates
chr2:415801-417033:+
Coord C1 exon
chr2:415801-416243
Coord A exon
chr2:416244-416906
Coord C2 exon
chr2:416907-417033
Length
663 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGTGACTTTTACAATTGCAGGGC
3' ss Score
9.02
Exon sequences
Seq C1 exon
CAGCTAAAGGATCCTGCAGGACACCGGGAGCAGAATAGCTGCCAGCCTCAGCCTCTTCGTTGGAGCGGGACATGGCCTCCGCGCTCCCCGGCAGCTGCCTCTGCTCATCCAGCCTCCCTCAAGCACCGGGCGAAGCCGTGCCAAGCAGCACCGCCAGCATCTCACTGTGGACAGTGGTGGCTGCTGTGCAGGCGGTGGAGAAGAGCGTAGAGGCCCACGCCTCCCGGCTGCTCAACCTTGAGCGCAGGACGGTGACCACTGAGAAAAAGTACTTGGACTGTGAAAAAACAGTGGTGGATTTTGGGAACCAGCTGGAGAGTAAGCTGACCGTACTGGGCACTCTCATCCGGGAGTACGGGCAGTTGCAGCGGCGTCTGGAGCACATGGAGAACCTGCTGAAGAACAGGAATTTTTGCATACTGCGCCTGCCCCCCGCCCCCAAG
Seq A exon
GTAACAAACTGCTCTTGGGGGGCACACAGTGGGTGGTGACGCACTGAACAGGCTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGCGACCCTGCACATAGCAGGGGGTTGGAACCGGATGAGCACTGTGGGCCTTTGCAACCCAGGCCATTCTATGTTTCTATGACGAGGACTGAGCGTGCCCTGATGCTGGTGGCACCTGGTTGAGGTGTCCCAGGAAGCTCTTTGTTTCCCCAAGCACATCAGCTGCTTGTGATGTTTTCCTGCACTAGAAATGAGAATACAACCGGGGGTGGTTGTTCGTGTATGTGTTTGTATTTACTTGAATCTCTCTGCAAAAGGACAGATGGTTACTAAATCATGTTCTTCCACACAAAAATAATATGGAAGGAAACAGAACAGTGAGAAACTGGCAGTATGCTTGCCCAGAATTAGCACAAATGAAGAAAATTCTTCAAACTGGCCATCTGAGTCGTGACGATACTTGGAGGCAGAATTTATTTTGTCCTTTCAGCGTTTGATATATGGTAGCAGCGATAAATAGAGATGCAAAAGTTCTCTCTTTTCAGGTCTGTATCAGGGCTGAGTTTGTGACTTTTACAATTGCAG
Seq C2 exon
GGCCCGGAGGCGTCTGAAAGTGAAACTGCTTGCTTTGCTGAGCAAGAGTGGGAGAACCTGGAGGAATGGCAGAAGGAGCTGTACAGGAACATGCTGAGAGGGAACAGTGAATCTCTGAACTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819:ENSGALT00000039361:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.232
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=63.7)
A:
NA
C2:
PF0135222=KRAB=WD(100=81.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCATCTCACTGTGGAC
R:
GTTCTCCCACTCTTGCTCAGC
Band lengths:
348-1011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]