HsaINT0186753 @ hg19
Intron Retention
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:13076]
Coordinates
chr7:148895425-148903914:+
Coord C1 exon
chr7:148895425-148895844
Coord A exon
chr7:148895845-148903787
Coord C2 exon
chr7:148903788-148903914
Length
7943 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTAACCGCTTGTTGGCTTAGGTT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GCTCAAGAATGGGACATGGACGCCCGGCGGCCAATGCCTTTTCAGTTCCCACCCTTTCCAGATAGGGCACCTGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGTTGCCCACAGCAGAGATCTCACTCTGGACTGTGGTGGCTGCCATTCAGGCTGTGGAGAGGAAGGTGGATGCCCAGGCCAGCCAGCTGCTGAACCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGTGAAAAGACGGCCGTGGAATTTGGGAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACTTGCTGCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTATGTGGTGGTCCCTGGGGCAGGGATAGAGGTGAGGAACAGCACAGGTGCATAAAATTCTTGATTTCATTTTGTCAGCCCTTCTCATAAACTTCTCTGGCTCCCCGTTATCCAATTTCAGTGTCTTCTTAAAGCCTGTCTCCACTGAAACAACCTGGTCTTGGACGTTCTACCCCAGCAAGGCTCACTCCATTCATTCCCCACAGTCTGCATTTCTGTCTGGGAGCCTTTGCTCTCGCTGTTCCTAGACCCCTCTGAGTTGTCTGGTTGTCTGCAAGTTCTTGCAGCTCTTCACTCCTTGGTTTTCCCACTTGACACCTACCAGCGATCATGTGTCATTGGCTGTCTTGGTATATGCTCACCGGAATGTGGCTGGAGTCGCACCTCAAACCAGGCTGCCTGGAGTTGCTTTCAAGTCGTAGTCACTTATCTCAGGGGGGCCCTTCTTAAAGTTCAGAATGCACACTCCGTATCTTACTCCGTTCCCTCTCCTGCTTTCCTCCCGGATCCTCAATGCTGCTTTTCAGTTCACTGAGAGAACGGAGTCACCCAGAAGAGGCGTCCACATGCAGCCAGCTTGTTCTTCCATCTGCTGCTCGGTGGCCACAGACTCTGCTTTCCCTTGTTCCTGTGGCTTGATGTCCCCTGCCCACCCCAGGAGGTCACCCCCAGCGTCTCTCTCCTTTCTCCTCTGAGTCATCAGCTCTCCCCCCTCTGCTGGGCTATTCCCACCAGCATGTGACTGTTCTGTCCTGCTGTCCGTCTTTAACAGAAAACCTCCCTGGGCCCTGCATCTACCTGCATTGGTGCCTCATTTCTCCACTCCTCTTTAGAGCAGAACCCCTTGAAAGAGTTGTCTATACTTGTTGTCTCCAATTCTTTCTTCCCCATTTTCTCTCCTTCCCTCCCTTTTCCCCTTCTCTTTATTATAGAATATTCAAATAAAAATAGACAGAATAGTATAATGGGTCCCCATGTATCCAAATTCCAGCTGCATTAGCTGCTAACTCTTGGCCAGTCTTGTTTCACCTAAATCCCTGCCCACTTCCCCACTCCCATTTTATTTTGAAGCAAACCCCAGACATTAGTCATTTCCTTTGCAAATATGTCAGTATTAGCTCAAAAGGTAAAGACTCTTTTTTTTTTAAGTGATAATCTCAATGTTATTACCACCACCACCATAGTAAAAGCTTCAGCCTAGATCACTGTCTAGCCAGTGATTAGATTTTCAGTTGTTTCAATTTTTAAAAACATTTTTTTAGTTTGAATTAGGATTCAAGTAATGTCCACACATTATGTTTGAGATGTCTCTTAAGTCTTTTTTAATCTGCGGGCATCTCTTCCATCTATTATTTTTCCTTTCAGTTTATCTGGAAGGAATTGGGCCACCTGTCCTGTTTTGCATCTCGCTGTCTGGATTCCACTGATTACGTCCCCTGTGGTCTCATTTAACATGTTCCTCTATTCTCAGTATTCCAGTTGATTGGTAACTGGATCTTTCTCTCTGGAACGCACTCTGATCAGGCCTTTGCTCACTAATGATGTCCGTGGTGTTACAGCCAGTGGTTGCTTCTCAGTCTTCATCCTCCCTGTCCTGTCAGCAGCATTGTGTGTAGGTGACCACTCTCTCCGTGAAACCCCTTGCCGTGGCTTCTGGGACACCTCTCTCTGCTGAGTCTTTTCCTACCTCACCAGCTGCTGTGTCTCATTGTTTGCCAATTTTGCCTCCTTTGGCCAGCTTTCTAATGCATGGAGTGGGCCAGACCTCTGTCTTGGCCTTTTGCTCTTTATTTACTCTCCTCCCTCATGACTGCATCCCGTCTCACAGTCTTTATTATTTATTTATTTATTTATTTTTTTTGAGACAGAGTCCCGCTCTGTTGCCCAGACTGGAGTGCAGTGACGTGATCTTGGCTCACTGCAACCTCTGCCTCCAGGGTTCAAGTGATTCTCCTGCCTCAGCTGCCCTAGTAGGTGGGATTACAGGCATCTGCCACCATGCCCACCTAATTTTTTGTATTTTTAGGGGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTGGGCCTCCCAAAGTGCTGAGGTTACAGGCGTGAGCCACCACGCCCAGCTAGTCTCACATTATTAAAAGCAATCTGTATGCTCTCACCTCCCAAATAGATGCTTTCTCTCCCCTGCTCCCTTTCTATATGTTGCCCAGCTTTCTTTCTGGAATGCCAGATTCACATTCCTACCTATTAATTCATTTGGATGTCAGTAAATCTTAGATTTAACATGTCCAAAGTGAACTGCGGATCGCCTGCCTGAGACCTGTTCTACCTGAAGTTGTCCTCATCTCCGTTGATGACGGATGGTTCCATCCTTTCAAGTGCTCAGGCCAAAGCCTTGGAGTCATACTTGTCTCCTCTCTTTCTCACACCCTACTTCCAATCTATTAGTAAATACCCTGATTTTTCTTCAGAATATATCCACAACCTGGCCACTCCTCACCACCTCCACTCCCATCGCCATCGTCTGGTCCCAGGCACCATGGTCTTTCATCTGATTTTTGCCATGGCCTCCTGGTGGGTCTCATTGTCTTCATCCTTGTCCCCCCACCCATACAGTCTATCTCAACACAGCAGCCAGAGTGATCCTTTGAAAATGTGAAGCAGTCACATCACACCTCTGCTTAAACCTCCCAAATGGCTGGGCACGGTGGCTCACGCCCATAATCCCAGCACTTTGGAAGGCCGGGCAGGTGGGTCATGTGAGATCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGCTGCAGTGAGCTGAGATCTTACCACTGCACTCCAGCCTGGGTGACAGAGTGAGAATCTGTCTTAAAAAAAACCCAAAAAACACCTCCCAAATGGCTTCCCATCTGATTAGAATAAAAGCCCATGTCTGTTTATGGCCCACGCTCTCTTCCCCTGCCTCTCTGACCTCCTCTGCATCCACTCCCTCCTGCTCACTCCCATCTGTGCTGTTCTGCCAGCACACCACGTGCGCCCCCAGCTCAGGGACTCTCCACTGAGAAGCTCCTGCCCTGAATATCTGCATGGCCGTCCTCGCCACCTCTTCCATCAGGGTCTGCTGAGGTGCCACTTCATCAGCATGCCCTTCTACAACCATCCTATATGAAAGAACCACGTCCCCCAAGCACACTCGTCTCCCTGCCCTTACTCGAATTTTCTACAAAGCACTTTTGCCATTGACATCTTAAATATTTAAGATATGCTTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCCCAGGCTGGAGGGCAGTGGTACAATCTCGGCTCACTGCAACTTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATAACAGGCATGTGCCACCATGCCCGGCTAATTTTTCTTTTTTTTTTTTGAGACGGAGTCTTGCTCTATTGCCCAAGCTGGAGTGCAGTGGTGCGAACTCGGCTCACTGTAAGCTCTGCCTCCCGGGTTCACACCATTCTCCGGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACACATCACCACGCCCGGCTAATTTTTCTATTTTTTTTTAGTAGAGACGGGGTTTCACTATGTTGGTCAGGCTGGTTTCGAACTCCTGACCTCGTGATCTGCCCGCCTTGGCTTCCCAGAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCATCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCTGGCCTTATGATATTATTCTTAAGTTTTGTATTGCTTTTTTTGTCTTCTTGGTTGGTTTTCCCCAACCAGAGTGTAAATTCTGCTTGGTTGCCTGCTGCATCCCTGTGCCTGGAATGGTACCTGGCTTAGACTGGTATGCAAAAAATGTTTGTGGAGTGCCTCTCTCCAGCTGGAGAGCTAACAGCTTCCTGGCAGGGACTGGGTCTTGTGTGTCTCTGTGTCTGCTGAGGCAACCACCCCAATGACTTTGCCAGAGGAGTTGTTTGACGTTACTCATTGAGGCTTCACAGAACTGAGTTGTAATCGTGGCTCTGGTTCCTCAGCAAAACATTTCCTGGCACTGCAGCCACAGAGGCTGGTTTTTAGTATGGTTTTGCATATGTCGCTTGTCTAGCACAATCAGCATTTACGTACACACTGCCCTTTTCTTTTGTCTGTTCTGTGTGTCTCAGCGCATATCCTTGTGTGGCACTGTGGCGTGTTCTGTGCGCTGCATTAGGCATTAGAGGAGACTTGACTTGACAAGGGCTCTTACAGAATAATGAAATGGTTTTGGGGTCTGGAATCAGAGGACTTGGGTTTAAATCCTGACTTTGCCACTTACTGGTTTTTTGTTTTTTTGGGACGGTCTCACATTGTCATCCAGGCTGGAGTACAGTTATACAATCATAGCTCATGCAGCTTTGAACTCCTGGGCTCAAGCAATCCTTCCACCTCAGTCTCTCAATTAATTAGGACTATAGGCACATGCCACCACACCCAGTTAAGTTTTTTATTTATTTTTATTCTTTGTAGTGACAGGGTCTTGCTTTGTTGCCGAGGCTGGTCTTGAACTTCTGGGCTCAAGCAGTCTTCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGCTTGAGCCACTGCATGAGGCCTGCTTGTACTGATTTTCCTATCATTGGTCAAATGTATTTTTTGTTGTTTCTGAGCCTCCTTAATTCCTCTTTTGAAGGAAGTGAAGTATAAACAATTCAGTAAATTCCCAGCTGGTTTCTCTGAGTTTCAGGGTTATTATCAATAAAACGAAGATGATAATATGCTTACTTCATGGAGTTGTGAGGATTAATTAATTTTATTTGTGGGAAGACACTATGTAGATTATTGTGTTAGTTACCTATTGCTGTATAACAGATTACCTCAAAATGTAGCAGCCCAGCCTAAAAAATAATTATTTATCATCTCACCATTTCTGTGGGTCAGGAACTGGGGAGCAGCTTAGGTGAGTGGGTCTGGCTCAGAGTCCCATGAGGTTACAGTCAAGCTGTTGAATGGGGCAGCAGTTATCTGAAGGTTTGACTGGGGCTGGAGGGCCTGATTCCGGCATGGCTCACTCACGTACCTGTTGGTGGGAGGCACGTGGTCTTGGGGGAGGAAGAGGAAAAAGTAAAAAAGACACGTGCCAGATGGACGGGAGGCAACATAATTACGGGAACCAAGCAGGATAAAATTCTAGAAAGATGATTTGACCTTTCGAAGAGGTCAGAATTGTTGAGGATTTCAACAGAAGGTCGCTGATGATCTTCCAGAGTGTGGTTTCAGAGAATGGAAGGTACAGAGGCAGAATCTAAGGGGGTAAAGAATGCATAGATGGTGAAGAGGAAAAAACAGAATGTGTCTCTTGGGATGTTCCCAGTGAATGGGGAGGGCAGAGTGACCTGAGGGAGCAGCGTGTTGAGGGAAGGTTTTTCTGAGGTTGGAATGACCCTGAAGGACGGAGCCAGTAGAGAGGGAGAAACTGATGACTTAGATTAAGCTTCACAGGCAGGAGGTGGAGGAAGAGGTGAAGGGCACATACCGTCGGCCTTGGATTTGCAAGGAGAGGGGCAAGAAAGGAGCTTGCCGGCGCCTACCTGAGATCAAAGACAGACAGATGTGGGAGGTCACTTAAAGGTCTGGGAGAATGAAACGTTTGAAACAAGCCTCCCGGAGAACATAGCAAGGTGTCAGCAAGAGACAAACAAGAAGCTTCTGAAGCAGCCGTGAGACAGCGGTATGAATTGGTGGTGGATGTCATCTGCGGAGTTCTAGTAACAGAGAATTAAAATGAAGAAAGGGGGCTGGGCACGGTGGCTCACGCCTGTAATACCAACACTTGGGGAGGCCAAGGCAGGCGGATCACGGGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAATAACAACAACAACAAAAAAATTAGCCAGGCGTGGTGGCACACACCTATAGTCCCAGCTACTGGGGAGGCTGAGGCAGGGGAATTGCTTGAAACTGGGAGGCGGAGGTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGAGACAGAGCGAGACTCCGTTTCAAAAAAATAAAAATAAAAAACAAAATGAAGAGGCCAGGTGCAGTGGCTCACCCCTGTAATCCCAGCAATTTGGGAGGCTGAGGTGGGTGGATTACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAAGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACTCGGGAAGCAGAGGTTGCAGTGAGCTGGTATCGCGTCACTGCACTCCAGTCTGGGCGACAGCGAGACTCTGTCTCAAAAAATAAATAAATAAAAATAAAAATAAAATGAAGAAAGGGATCTGTATTAATTTTCCCAGGTTGGGGCTTTTCCTGCATCTGGTGGAAGGTCCAGTAGCTAAAGATTCTAGTTCTGATTGTAAAGATGGACAGTGAGTTGTCAGTCCGTAGGGGTGGGGCCATGGCACTGAGGTGTAGACATCGCACCTGCGCATGGCATTCTCAGAGTTACAAGCACCTGGTAAAAGGGCTGACATTTCTAACTTACATAAAGGTGCTGCCCACTCACCATGCTGAGTAGTGGTAGCTGTGCTCCTGACTTTGCCTTTTCTAACTCACCCCAAGGTGCCATACAAGCCAGCTTTGGCCCTGTAAATGCAGATACGTAGATGAATGGACTGTAATCACAGGATGGGGGAGGATTGAGGGGTCGGATTTCAGACCGAGAGTGAAAGGCTGGTTCAGTCGGAATGTGAAAGTGGTAAGAGGGAAGGCTGTGTGTCCAGAGGAGGAAGTTCAGTTATCAAAGTCATGGAAGTGAAACGATTTTGGACAATTCGGTCCAAGTTGAGGTCGTGCTGGTGAGTGGCTGAAGTGAGTGATTGCAAACTGAAATCGGCTTTCTGTAACAGATCCGAACACACTTGTCATCAGTCTGACAAGTGACTGACACCACGCGACGACTCGGGCCGCAGTGGAGCTTCCTGGTGTTGGCACTCGCTGCGCAGCACACTCAAGTATTTATTGATTCCCTACTGTATGCTCCTTGATGATCAAGATAGGGTAGTGAACGAAGTGGACCAAGGTCCTGAACCTTAGCACAGGCCTTAGATTTTATATGCTTTGCTGACAAAGAGGTAACTGTGTGCACAGAGGTGACCTGACCTGAAATACAGGTTTGGTAACCAGGTTTTACTCTACCTGGCTCACGGATACCCACTCTGAGAACCCATTACCCCTCTGTCACCCTGAATACCAAAAGAAGCATATTGACTACTCTTTACCCTCAGGTATCCAGTTGACCTAAAAGTGAAATAACAATGGATGTGGCTAAATGCTTTTTCTAAAAAGGCAGGGTTGACCATCCGTGTTATTGAAAGCATGAGAAGGTCCGGGACAGAGAGGACTGACTCCACTGAGATGGACAGTGGGGACTGGGGAGCCACGGAGAGCAAAGGCCGGGCTTTGGTGGGGAGTGGGTCTTGTGGCCCGCAGGAGAAGGGGAGGTGGTGGGGAGGAACAGGCAGGAGGCGCTAGATTAACCGCTTGTTGGCTTAG
Seq C2 exon
GTTCCAGTGACTTTTGTCGACATTGCTGTGTACTTCTCCGAAGACGAGTGGAAGAACTTGGACGAATGGCAGAAGGAGCTTTATAACAACCTTGTTAAGGAGAACTACAAAACCCTCATGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265-ZNF282:NM_003575:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=57.1)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)