BtaINT0165205 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020448 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr4:113086193-113095107:+
Coord C1 exon
chr4:113086193-113086674
Coord A exon
chr4:113086675-113094980
Coord C2 exon
chr4:113094981-113095107
Length
8306 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TAACGCTGTTGTTGGCCCAGGTT
3' ss Score
5.1
Exon sequences
Seq C1 exon
GCCACCCTCGCTCCTCACACGGGGTCTCATGCCGGCCGTCACTTCCCCTCCTCTGCCCGCAGGCTCAGGAATGGGACATGGATGCCCGGCGACCGATGCCTTTCCAGTTCCCGCCCTTCCCAGATCGGGCCCCCGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGCTGCCCACAGCGGAGATCTCGCTCTGGACCGTGGTGGCCGCCATCCAGGCCGTGGAGAGGAAGGTGGACGCCCAGGCCAGCCAGCTGCTCAACCTGGAGGGCCGGACGGGGACGGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACGGCCGTGGAGTTCGGGAACCACATGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTCCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAGGAACAGGAATTTCTGGGTCCTGCGGCTGCCCCCAGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
GTAAGCGGTAGTCCCCAAGGGGCAGGGAGGACGGTGAGGACCATCACCTTGATTTCATTTTGTCAGGCCTTCTCACAAACGTCTCTGACGCCCTGTTGCCCAATGTCAGTGTCCTCTCAAAGCCGGCCTCCACTTAAACAACCTCGTCTGGAATGTTCTTCTGCAGGGAGGCTGGCCTCCACCCGTTCCCCAAAGAGCCCGCGGGTTCTGTCTGTGAGCCTTTTGCCCTCTCTGCTCCCAGTCCCTCCCGAGGGGTCTGGGTGTCTGCAAATTCCTAAAGCTTTTCCCGCCTGGGTTTTCGCCTTGACACCTTCAAAGACCGTTTGTCATTGGCTGTTGTCTGTGCGGGCTCCTCTGCACGCAGCTGGAGAAGACCCGAAACCACTCTGAGCAGAGTCGCTAGAGTCATGACCATCACCAGCGGGCCCATCTCACGATCAGAATTCACGCTCCGTTTCCTGTTCTATTTTCCCTCCCACCTTCTCCTGGCCCATCAACCCTGCACTCTTGGTCAACGGGCTGCTCTCCAGTCCACTGAGAAGACGGGGTCCCCCTACAGAGACTTCCACGTCCAGCCATGTGTATTCTGCCTTTCTGTGGGCTCCACCCCTTCACCTGCGCCAGGAGTCACGCAGCCTCTCTCCCCTTCGCCCCCTGCACCGTCACCTCCTCCCCCTCCACTGGCTCGTCCCCACCAGCCTGTAGACATTCTGCACTGCCGCCCATCTCTGGAGTAAAACAGCTCCCTAGACCAGCGTCTCCCGCCACTGCGACTTCATCTCTCTGCTCTGCTTTAGAGCAGTCTGCATTTGCTGTCACCAGTTCTTTCCCTCCATTTTCTCTCCTTCCCTTTTTATTATAGAGAATTCAAACCTATATAAAAGTAGATAGAATTGCAAAATGAACCCTCATGAACGCATCGTCCAGCTTCAGTGGTTACCAGCTCTTGGACAGTCTTCTTTCATCTCACTCCCTACCCATGTCTCCGTCCCATTTTATCTTGAAAAACATCTCAGACAGCAGTTGTGGTTTTGTTGGCCGTATTGTGACGCGTGAAAGTGTCCGACGTCAAAGTGTCAGTCTCTTTGTGACCCCATGGACTATACAGTCCATGGAATTCTCCAGGCCAGAATACTGGAGCGGGTAGCTGTACCCTTCTCCAGGGGATCTTCCTGACCCAGGGATTGAACCCAGGTCTCCCGCATTGCAGGCAGTTTCTTTACCAAGGGAAGCCCATCGTGAGGCATGTGGGATCTTATTTCCCCAACCAGGGATCGAACCCAAGCTCCCTGCATTGGAAGGCTGAGTCCTAACCCTGGACTGCCAAGGAAGTCCCCAGCAGTTGCTTTAATTGTAAATATTTCAAAGTGTAGCTCTAAAAGGTAAGGACTCTCTTTTTAAAGTAAAAATCTCAATACTGTGGCTACCACAACAAAGACCTCAGCCTACTCAAATATCCAATCAGTGTTCCGATTTTCTTCCAAAAATATTTTGTTCTATAGTCCAGTCTAAGTACTTAAGGCGTGCCTGACTCTTGTGACCCCCATGGACTACAGCCCGCCAGACTCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCTTATCCGGGGATGGAACCTGGGTGTCCAGCATTGCAGGCCAGTTTTTTACCAACTGAGCTGCCCAAATGTGAACTTAAATAAGTCTACACACTGTGATTGCTATGTCTCTAAGTTTTTTCCCCCTGTAAGTGCCTCCTTTGTCTCTCCCATATTCCCTTGTAGTACTAGGCCATCTGACCTGTGGACTTCCTCACTGTCTGGACTCTGCTGCTGCATCCTCCCTGCTCTCATTTATTGTGTTCCTCTCTTCTCAGTCTTCCAGTAAACTGGGGATTGGGTGATTCTCCCTGAACTCATGTAGCTGAGGTTCTTGCCACCACCTCGTCATCCTGTTGGCCTTGCCAGAGCTCTAATGGTGTCCATGATCATAGAGCCAAGGATCATTAGAACCACAGTATTAAAGTCCCAGTCTTCGTCTTCCTGCCCTCTCAGCAGCGTTTCATGCAGGAGACCACCCTTCCTAGAAACACCCTTTGGCTCCCAGACACCCCTCCCCACCTTGGTTCTTTCCCTACAGCACCAGCTGCCGCTTCTCAGTCTTCTTTGCAGTTTCCTCTCCTTTTCTTATGTTTGGAGTGGGCCCGGGCTCCTCCTGACCTGCCTGCAGTCTCTCCTCCCTCCCTCGTGATTTCACCCAGGCTCAGCGCTATAGATACAGTCTGTGTGCTGTCAACTCCCGAGTGCAGTCTTTCCCTCCCACTCTTGCTCTCTGTATCCTGCCTAGACTTCCTTCTCGAATGCCAGATTCACATTCCTGCCTGCTAATTCAGTATCTCTATCAGGCTGTCAGTAAATATCTTAGATTTAACTCAAACCAAACTGGGGCTTCCCTGATAGCTCAGTTGGTAAAGAATCCACCTGCAATGCAGGAGACCCCGGTTCGATTCCTGGGTTGAGAAGATTCCCCTGGAGAAGGGAAAGGCATACCCACTCCAGTATTCTTGGGCTTCCCTTGTGGTTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTAGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTAGAGAATTCCCAGTTCATGGGGTCACAAAGAGTCGGACACGACTGAGTGACTTTCACTTACTTACTTAAACTGAACTGATTTCTGCCTGAACCCTGTTCTCCTCAAAGTCATCCTCATCCTTCCAGCTGCTCAGGCCGCAAGCCTCGGGGTCATCCTCGCCTCCTCTCGTTCTCACGCCTGATTTCCATTATATTAGTAAATACTATCTGATTTTTCTTCAAAATATACACACAGCCCCCCTCCCACCCCCTGCTGCCTCCACTGTTCCCACCTTCGTCTAATTGTAACCACCACTGCCTCCTGCCTGATTCCTGCTGTGGCCTCCTCGCTGGTCCCCTTGTCTCCATCCTTGGCCCCCACCCCAGACCATCTATTTTCAACAGAGCAACCAGACTGATCCTTTTGAAAAATATATCAGTCATATCACCTCTGTTTAAAGCCCTCAAATGGCTCCCCAGGTTATTCAGTTTAAAAACCCCCATTTTGTCAGTGGTCCCCTCCCTCAAACCCACCCTTCTGACCTTATCTCCCTTCACCCCCTCTTGCCCACTCCTTGATGCCAGCTCACCACAGGGTCCCCCTGGCAGGGACTTTCCTTCACTGAAGCCGCCCTCCACCCCAGGTCTCTCCCATCAGGGGTCTGCTAGCTGTCACTGGATCAGTGTCCCCTTCATGGCCACCCAGCCCAGCACACTCTTTCCTGGGTCCCTGCTCTCATTTCCTCCAAGCAATTAAGCATTCAGGTATCTGAAATACTTTCTCTGTGTCTCTTGGTTGGCTTTCCTCCACGTGGTTCATTGCAGCATCCCAGTGCCTGTGACAGGACCTGCTTGTAGCAAAACATGTGTGCCGAGTGACTCTTCAGCTGGAGGGCTCACGCTTCCACGTAAGGGCCTGGCCCTTTTTTATCTTTGGTTCTGGCAGTTAAGCCAGTGGCTTGGCCAGAGGAGGTGCTGGACAGTGATCCATCAAGGCCTCGCAGAGCTGAGTCCTAATAGCGGTTCCTCCCTAAGCTGCCTTCTGCCGCTGCAGCCCACGGGGCTGTTCTGTGTAGAGTTTGGCGTATATACTGTGTTGCTGTGTCCATCTCCCCACACACCACCCTTTGCTCTTGTCTGTGCTCTGCACTCTGACTCAGTGCCGAGTCCTGGCCCCACTGTGCATTCTGGGGGGTGAACCACGTGTCGGGGTCTTGATTTGTACCTCACGGAACATGGCTTACTTGTGGGGTCCGGAAGCAGAAAACTTGGGTTTGAATCTTGGCTTTACCATGTATCAGTTTTCCTACCACAGGTCAAGTATGTTTTTTGTTGTCTCTGGGCCTCCTCAATTCCTCTTAGGAAAGAAGTGACCTTTAAATAAGTCATTCAGCAAGTGAATTCTCAGTGGGTCCCTCTGAGCTTCAGTGTTCTTATCTGTAACATGAAGATGATAATACGCTTGATTTGTGGAGCTGCAAGGACTGCTGTGACAACACCGGGTAGCTCATTGTATTAGTTATCCACTGCTGTGTAACAAATACCCCGACACTTAGCAGCCTAAAAAAAATTATTTTTTATCATGTTACAGTTTCCATGGGTTAGGAATTCAGGAGCAGCTTGGCTGAGTGGTTCTGGCTCAGAGTCTCATGAAGTTATAGTCAAGCTGTTGACCGGGGCTACAGTCATCAGAAGGCTCAACTGAGGCTGGAGGATTGGCTTCCAGTTGCTCCTTCCTTCCTGGCAGGAAGCCTCAGCTAGTTCCTCACTGCTTGAACCTGTCCCGTAAGGCTGCTTAAGCATCCTTATAACATGGCAGCTGTCTTCCCCCAGAGTGAAGGATCCAGAAAGAGAGACCAGGATGGAAGCTGTAGCAACTTTTATGACCCAACCTCAGAAGTTGTTTTACAAATTTGTTGACATACTGAGTGCAGCACACTAACAGCACCATCTTTTAGGATATTAAATAGCTCAACTGGAATTCCATCACCTCCACTAAGACGCTTGCTACTTGGAAGGAAAGCTATGACAAACCTCGATAGTGCGTTAAAAAGCAGAGACATCACTTTGCTAACAAAGGTTCATAGAGTCAAAGCTATGGCTTGTCCAGTAGTCATGTACAGAAGTGAGAATTGGACCATAAAGAAGGCTGAACACTGAACAATTGATGCTTCCAAATTGTGATGTTGGATAAGACTCTTGAGAGTCCCCTGGACTGCAAGAAAATCAAACCAATCAATCCTAAAGGAAATCAATTCTGAATGTTCATTGGAAGAACTGATGCTGAAGCTCTAATACTTTGGCCACCTGATCTGAAGAGCTGACTCATTGGAAAGATGCTGAAGCTGGGAAAGCTTGAGGGCAGGAGGAGAAAAGGGCGGAAAAGGATGAGATGGTTAGATATCATCACCAACTCAATGGACATGAATATAAGCAAACTCCAGGAGATAGTGAAGGACAGAGGAGCCTGGTGTGCTGCAGTCCATGGGGCTGCAAAGAGTTGAACATGACTTAGGGACTGAACAACCAAACAGCAGAAGTTGTACACCATCACTTCTTTTTTTATTAGAAGCAAGTCACTCAATCTTGCTCACACTCAGTGGGAGGAGAATTAAGCTCTATTTCTTGAAGGGACAAAGAATTTGTGGATGTATTTTAAAATATCCACAACCATAAGGCACCATGAGACTTAATATTGTGGGCCATAGTTTTCATTCCTTGTAGACTCTTGGCCTTGTTAGATACATTCTCTTTGTCAGATCCAAGGAAGGCCGTTGTCTCTCAGCTCCTCTGTGCCTTGTGGGTTCTATTAATTGTGTAATTATTCATGATGATTCATGGATAGTCTTTTCTGTCTGGCTGAACTGTACGCTGCCCGTAGTCTTGGACCATGTTTCAGACTTCTGCCACATCCTAGCACAGTGAAGTTTTTACAAAGTGATATCTTTTTCCACCTGGGAGACTATGGTCCTAGAATTCTGACTGGTGAAGGGAGGCAGAGGGGTTGGTGTGTTGGAAAAGGTAACAGATTTTTTTTTTTGGCTGCACTGGGTCTTTGCTGCTGCACACGAGCTTTCCCTAGTTGTGGTGAGCAGGGGCTACTCATCATTGTGGTGCGTAGGATTCTCTCTGTGGTGGCTCCTCTTGCTGTGGAGCCTGGTATGTAGGCACGCGGGCCCAGTAGATGTGGCACACGAGCTTAGTTCCTCCGCGGCACATGGACTCTTCCCGGACCTGGGATCGAACCCACGTCTCCCGCATTGGTAGGTGGACGCTGATCCACTGTATCTCCAGAGAATTCCACCGACTTGGTTTTGAATACATTTAGTGTGAGGTCCTTAAAAGATGAATAAATGAAGCCAGTCAGAAGGCCGTTGAAATGTGAACTCTGAAGGGAATGTTGAAGAGTGTCATCTACAAAGAGGTACCCACAGAACTTGTAAAAGACAAAAGCAAAAAAAAAAAAAAAAAGGAAATTGCCAAGGGGAAAGGAAACAGGGAAGAGTGAGGGCCAGACCTTGATCTCGGAGGGAAGAAGGAGGAGCTGTAAGGAAGATGAGAGCCAGGCTCCGTGGCTGTGGGAACCAAGCAGGAGATTTCAGGAAGGTGCTCTGGCCTCTGTGAGGACTGAGGGGTCGAGGGTTATCGGCAGGAAACTGACAACCTCCCAGAAGGTGGTTTCAGACAGAATGGGGCTCAGGGGCAGATTTCAGGGAGTGAGGAATGTGTGGATTGTGAAGAAAACACAGAGCGTGCATCTTGGGAATGTTTCTTTTTTTTTTTTGAGCCATGCCAAGTGGCATGTGGGATCTTATTCATAGGTACCTGACCAGGGATGGAATCCATTCTCCCTGCAGTAGAAGCATGGAGTCTTCACCCCTGGACAGGGAGGTCTCTGGAATGTTTCAGGAGAAGAAGGCTCGTAGCCTCACTCAAGGTGACAGAGTGGAGGGCTGGAGGCCCTGCAGTGAGAGCAGGGTGGGGAGAGATGGAAGATGCCTGAGGGAGAAGCTGGTGTGGACTGCGTGTCACCAGCAGGAGGAGGAGGAGAAATGAAGGGCACGTGTGGGGAGTCGGCTCGCCGGGGAGACGGGCCGAGCCAGGAGCTTGCGACCAGCAAGCTACCGTCAAAGGGAGACTGGGGGTGGCTGGGGAGAGTGAAGAGTTGGAAAGAAGCCTCCCGGGGAACACAGTGAGATGGAAACAAGCCGGCCAAGAGGCTTGCGAAGCAGCCTGGAGCCTCAGCCAAGAGGTCAGAGTGTATCTCGATTGTCACCTGCAGAATTTCGTGACCTTTATCTTGGGCAGGGAATTTAAATGAAGACGGCGGTCTGCCTCAGTTTTCCTAGGTTGGGGGTTCGCCCAAGTCTGTGGAAGGTCCGGGGGACTTGAAGTTCTAGTTCTGTTTCTACAGATGGGAGTGCGCCGCCAGGCAGTAGGAGGCATCCAGGTGCTACATGGCACCTGACCCTGGCACCTCTCCTCTGTGTATGGGCACTGCCCACTCACCAGACAGCACGCCCGTGGGCCTGACCCCAAGAGGGCAGCTTTTTCTAATTCACACCAAGGTGCCATGTGTCAGGTACCAAGAAGGATGGTACCAAGAGTCAGGGCTTGGGGAGAACTGAGGGCTTGGGTTTCAGGGTGAGGGGGAAAGGCTGGTCCAGCAGGAACAGAAAGTGGTAGGAAGTGAGGCTGGTGGTCAGCACAGGGCAGCTCAGATCCTAAAGTCACGGAACTGAAACCATCCTGAACGATGCTGTGCAGATGAGGCCACAATGGTTAGTGACCGCAATCGGCACAGGAGGCCTCGCCCACCTGAGATGACAGCTTTATGGGGCAGACGAGATGCCCCTGAACCTTGTGACTGACATTAGACAACTGATGACTCAGGCTCCAGCAGGACCTTCCTAGTGTGGGCAAAGACCATTCAACACATCCAGCAAGTGCTTACTGACTCCGAACTACGAGCTTCTAGATGCTTGGGACATAGTGGTGCCCAAAGCAGATCAAGAGCCTTAGCACCAGCAAGTTTTAGTGACAAAAATGTAGCTGTGTACCTAGAGGTGACAGAAGTACAGCTTCTCAACAGGATTTTATTGTACTTGATTCCCTGAGACTCTAAGAACCTACCCTATGTCTGTCACCCTGAACACCAAAAGCTTGACTTTTGGGTACCCAGTTGACCTTAAAGTGAATTTACAAAGGATGTGGTTAAATGCCTCATTTTTAGTTTTTTATTCTATTTTTTTCAAACTTTTAAACTTTTCATTTTGTATTGGCATATAGCCGCTTGACAATGCTGTAATAGTCTCAGGTGAACAGGAAGGGACTCAGCCATACATATGCATGTATCCATTCTCTCCCAAACTCCCCTCCCATCCAGGCTGTCACATAACTTTGAAATGCCTCATTTTTAAAAGGCAGTGGTGACCATCCTGTTATTGGAAGCTCAGGAGAATCAGAGTAGACTGACTCCACTGAGACAGGCCAAGCAGGATGGGCAGGTTGGGGCCATGGGGACTGGGGCCAGAGTCTGGGGTGGAGCGGTCAGTGCCCCTCCCGGGAGCTGGGGAGGAGCAGCAGGCAGAAAGCACCAGACTAACGCTGTTGTTGGCCCAG
Seq C2 exon
GTTCCAGTGACCTTTGTGGACATCGCTGTTTACTTCTCCGAGGACGAGTGGAAGAACCTGGACGAATGGCAGAAGGAGCTTTACAACAACCTGGTTAAGGAGAACTACAAAACCCTGATGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020448:ENSBTAT00000027249:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=49.7)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]