GgaINT1030676 @ galGal4
Intron Retention
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:483995-485159:+
Coord C1 exon
chr2:483995-484291
Coord A exon
chr2:484292-485032
Coord C2 exon
chr2:485033-485159
Length
741 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ACTTTTATTTGTAATTCCAGGTA
3' ss Score
7.97
Exon sequences
Seq C1 exon
GCTTCGTCGTGGAGCACGCGCACCCGCAGGGCCCGGGCGGCGCAGGCTGCGGGGCAGGGCGAGGCTCAGGCCCAGCAGCTGCGGGAGCTGTGGAGCCGCACCGAGAAGGCCGAGCGGCGGCTGTTGGCCTTCGAGAACCTGGTGGCAGAGCTGGGCAGCAACCTGGCAGCCCTGGGCAACCTGCTGCAGGACTACGGGCACCTCCAGCAGCGCCTGGACAATGTGGAGAACCTGCTGAAGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCCGGCACCCGGGGTGAGGTGCCCAAG
Seq A exon
GTAAAGGCATGGGGCCTGCGCTCACAATCCTGCTACAGTGGCCGCCGAGGCCGTGAGACCTTCACGCCTTGGTGGCAAGGAAGGGCTGGTCCCCAACCCTGTGGTTGGGGTGACGAGCCCTGGAGCTGTGCTGCTGCCAGCATGAATGCACAGAGATGTGGCAGACAGCATGGCGGAGGTCCTGTAGTATCTACATCATGGGCTGCGGCTTTTGTGCTAGTCCTGCAGTTCTGTCCCTGCTGCCACTCCCACCTTGAGTTGTCTGAGGAGCTGCAGCCCACAGCTGGCACTGCGTGCAGGCCCCTGGAAGCACAAATGCCACATGGGTGGTTGTGGAGACAGTTGGGAAATGCTGGAGCACTCTGCTCTCAACGATGGGCTGGGGCAGATGAGCAGCTGTGAAACCAAGGCTTGCAAGCCCCCATGTGGCCAGGCGTGCTTTTCAGGAGGAAGTTTTTCACCCAGAGGGTGGTGATGCACTGGAACCCATTGCCCAAGGAGGTTGTGGATGCCCCATCCCTGCAGGCATTCGAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGCTGGTTGACGACCCTGCACATAGCAGGGGGGTTGAAACTCAATGAGCATTGTGGTCCTTTGCAACCCAGGCCATTCTGTCATTCTATGATTCCCTACATGCGTGTTATTTCCAGTTATCTGTAATTGCAGCAAGCAAGTCACCAGGCATGTAACTTTTATTTGTAATTCCAG
Seq C2 exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143:ENSGALT00000045404:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCGCACCGAGAAG
R:
CCAGGGAGATCAGGGTCTCG
Band lengths:
334-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]