BtaINT0165045 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000389 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr4:113127975-113128598:+
Coord C1 exon
chr4:113127975-113128370
Coord A exon
chr4:113128371-113128471
Coord C2 exon
chr4:113128472-113128598
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTGACGTTTGTGATTCCAGGTG
3' ss Score
7.67
Exon sequences
Seq C1 exon
CTTCAGCACAGGAGGAAGCACCGCTCCAGCCCTCTGACTTCCTCCAGGCCACCCCCACAAGCAACGGAGAAAAGCTCCTACCTGGAGACCACAGAGATCTCGCTCTGGACCGTGGTGGCCGCCATCCAGGCCATGGAGAAGAAGGTGGAGTCCCAGGCCGCCCGCCTGCTGACTCTGGAGGGGCGGGCGGGGACAGCCGAGAAGAAGCTGGCTGACTGCGAGAAGACGGCCGTGGAGCTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAACGGGGAAGTTCCCAAG
Seq A exon
GTAAGCCGATTCTCAGGGGCTGTCTGAAGATTTCCCAGTGGCCGGCTTGTCCTTTGTATCCTTGATTGGAGGCCCTCACTGTGTGACGTTTGTGATTCCAG
Seq C2 exon
GTGTCCAGGTCACTTGAAAATGATGGCGTCTGCTTTTCAGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTATGCCAACGTGATGAAGAGCAACTATGAGACTCTGGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000389:ENSBTAT00000000499:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
NA
C2:
PF0135222=KRAB=WD(100=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGAAGCTGGCTGACTG
R:
GTTCTCCCACTCCTGCTCTGA
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]