RnoINT0167858 @ rn6
Intron Retention
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77598160-77598800:+
Coord C1 exon
chr4:77598160-77598549
Coord A exon
chr4:77598550-77598673
Coord C2 exon
chr4:77598674-77598800
Length
124 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTTGTGGCTTACAATTGCAGGTG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CACAGGAGGAAAAGGCGCTCCACACCGTTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCAGTACTTCCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCTGTGGAGAAGAAGATGGAATCCCAGGCTGCCCGACTGCAGAGCCTGGAGGGACGCGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTACTGCAGGAGTACGGCCTGCTGCAGCGACGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGACTGCCCCCAGGCAGCAAGGGGGAGACCCCAAAG
Seq A exon
GTAGAACCTCTACATTTAAAAGTTAGGCAAGAAGGGGAACCCAGCCTTGACTAATCAAGATGTTGGTATCTGGATGGTACTCCTAGGAGTCAGAGTGCTCATTTCTTGTGGCTTACAATTGCAG
Seq C2 exon
GTGTCCGGGCCCCTTGAGAATGATGGGGTCTGTTTCTCAGAACAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTCTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711:ENSRNOT00000009054:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=61.5)
A:
NA
C2:
PF0135222=KRAB=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGACTTCGAGAAGAC
R:
CCAGGTTCTCCCACTCCTGTT
Band lengths:
251-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]