MmuINT0178740 @ mm9
Intron Retention
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47876506-47877145:+
Coord C1 exon
chr6:47876506-47876895
Coord A exon
chr6:47876896-47877018
Coord C2 exon
chr6:47877019-47877145
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
CTTGTGGCTTACAATTGCAGGTA
3' ss Score
8.04
Exon sequences
Seq C1 exon
CACAGGAGGAAACGGCGCGCCACGCCATTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCCGTACTTTCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCCGTGGAGAAGAAGATGGAATCACAGGCTGCCCGACTGCAGAGCCTGGAGGGGCGTGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGTCTGCCTCCCGGCAGCAAGGGGGAGACCCCAAAG
Seq A exon
GTAGCACCTCTATGTTTAAAAGTTAGGCAAGACAGGTAGCCGAACCTTGACTAATGAAGATGTTCAATCACTGGGTGGTACTCAGGAGTCAGAGTGCTCATTTCTTGTGGCTTACAATTGCAG
Seq C2 exon
GTATCTGGGTCCCTTGAGAATGATGGAGTCTGTTTCTCGGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTGTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763-Zfp212:NM_001145881:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=61.5)
A:
NA
C2:
PF0135222=KRAB=WD(100=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGGCTGACTTCGAGA
R:
ACTCCTGCTCCGAGAAACAGA
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: