HsaINT0186449 @ hg19
Intron Retention
Gene
ENSG00000170260 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:13004]
Coordinates
chr7:148947250-148947898:+
Coord C1 exon
chr7:148947250-148947639
Coord A exon
chr7:148947640-148947771
Coord C2 exon
chr7:148947772-148947898
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
3' ss Seq
TGTGCCATTGGTGATTCCAGGTG
3' ss Score
5.82
Exon sequences
Seq C1 exon
CACAGGAGAAAACGACGCTCCACACCTTTAACTTCTTCCACACTTCCTTCACAAGCAACAGAGAAAAGCTCCTATTTTCAGACCACCGAGATTTCACTCTGGACGGTGGTGGCCGCTATTCAGGCTGTGGAGAAGAAGATGGAGTCCCAGGCTGCCCGGCTACAGAGCCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCTGACTGCGAGAAGATGGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTATGGGCTACTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTAGTCTCATTGAGGATTAAAAGTTAGAAGAGAAGGGGGAGCCAGCCCTTTAATATGTAAGCACCTCAGTTGCTGGCTTTTCTGTCATAGCTGTGAGTAGAAGCACTCATGGTGTGCCATTGGTGATTCCAG
Seq C2 exon
GTGTCCAGGTCACTGGAGAATGATGGCGTCTGTTTCACCGAGCAGGAATGGGAGAATCTGGAGGATTGGCAGAAGGAGCTCTACAGAAACGTGATGGAGAGTAACTATGAGACACTGGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170260-ZNF212:NM_012256:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=61.5)
A:
NA
C2:
PF0135222=KRAB=PU(94.9=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGAAGCTGGCTGACTG
R:
CCATTCCTGCTCGGTGAAACA
Band lengths:
250-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)