GgaINT1003914 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:539301-541757:+
Coord C1 exon
chr2:539301-539699
Coord A exon
chr2:539700-541630
Coord C2 exon
chr2:541631-541757
Length
1931 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
TGTGGTGCTTTTAATTGCAGGTC
3' ss Score
9.85
Exon sequences
Seq C1 exon
GACCTGGAGTGGGCCATGGAGCCCCAGGAGCTGTCCCTGGAACAACCCCTGGCCGCCCCCGAGGAAGGGCCCGGCAGGGAGGCCGAGCTGCCCGCCGCCGAGATCTCGGTGACGCTGGTGACGGAGGTGCAGGCCGTGGACAGGAAGGTGGAGGCGCAGGCGGCCCAGCTGATGAACCTGGAGGGCAGGATGAGGATGGCTGAGAGCAAACTGATCGGCTGCGAGAGGACGGCCGTGGAGTTCGGCAACCAGCTGGAGAGCAAATGGACGGCCCTGGGCACCCTCATCCAGGAGTACGGGCAGCTGCAGAAGAGGCTGGAGAACATGGAGAACCTGCTGAAGAATAGGAACTTCTGGATCCTGCGCCTGCCCCCGGGGGCCAAGGGGGAAGTCCCCAAG
Seq A exon
GTAACGGGGCCGTGGGCTGTGTTAGAGACCTCTGGGCCACGTTAGAGACCTCATCTCACCCACGTGGGGTGGTAGCAAGGTGGGGTCAGCCTCTGCTCCCTGTAGAATGAGAGGTGATGGCATCGTGTTGTGCAGGAGGAGGATCAGGTTGGGTGTTAGGAACACATTCTTTTCAGAAGAGCAGTTGGGCTCTGGCACAGCTGCCAGGGAGTGGGGGGGGTCACTATCCTGGGGGGCGTTCAACTGTGTGGATGTGGCATTGAGGGATGTTGTTTAGTGAGTGTGGTAGTGAAGAGCTGGGGTTGGACTTGGGGATCCCAGAGGTCTTTTCCAACCGTAGTGATTCTGTACTGTGATACAGAGCTTGTGCTTCAGCCACAAGTTGTACCAGAGGAGGTTTAGGTTGGACATGAGGAAAAACTCTTTCTCTCAGAGAGTGGTCAGGCACTGGAATGGCCGCCCAGGGAAGTGGTGGAGTCGCCGTCCCTGGCACTGTTCAAGAGGCATCTGGATGAGGAGCTACAAGATATGGTTTAGTGGCCTGTGGTAGCAATGGTGATGGGAGGACGGCTGGACTAGATGATCTTGTAGGTCCTTTCCAACCTTGTGATTCTATGGTTCTCTAATGCATACTCCCAGAACCGTAGGAGTTGGGAGAGCCCTCTGCAGCTCCCCCAGTCCAACTGCCCTGTAATGCAGGTACCCAGAGGGTTTTGAATATCACCAGAGGAGGTTCCACCACCTGTCTGGGCATCCTGTGCCAGGGCTCTGCCACCCTCACACTGTAGAAACTCTTTCTCATGATCAGGCAGAAATATGTGCCTGTGTACCAATTTATGCCCATTGCCTCTTCTGTTGCTGAGCACTGCTGAAAAAATCCTGGCCTCGTTCCCCTCACCCGTTAAATGTTTATATGCACTGACGAGATCCTCTCTCAGCCTTCTCTTCTCCAAGCTGAACTGCTCCAGGGATCTCAGCCTCTCCCCACAGGGCAGTTGCTCCAGGCCTCAACCGCTGTGGATGATCAGCACACAGCTCACCTGCTGGTTGGGAGCACCAGCACAGATCCTTCTGTGTGGCTGCACACCCCTGTGCATGTGCAGTTGGTGCTTGACCCAGCACAAGGGTGGGCTGATGTTTGGGTCAGGCAGAGGGACACGGTGTGGCTTGTCCCCACATCCCTGCCTGTATTTGCACGTGCACACCCAGTTCTTGTTCAGAGGAGATTGCAGCAGAATTGTGTCCAAAATTGAGCAGGAAAAGAGCTTGTGTTGTATGCTGTGCAAAATATGTTGTCTGAAGCATGGGGAAATTGAATGGGGGCAAGGCTTAGGCAGGTGGTGGAGAAAAACACCATCGTATCCCTTCACCAAGCTGACAGAGCCGGGCCGAGGGCATGAGTCAGGCATGTGGGGGTTTGAATGAGAAAACATCCTTACATGTTTCTAACGAGAGGCTCTTGGAGCGGATCCAGAGGAGGCCACAGAGATGCTCAGAGGTTGGAGCGCTTCTGCTACGAAGACAGGCTGAGGAGCCTGGGGGTGTTCAGCTCGGAGGGAAAAAGGCTCCGGGGAGATGTCACTGTGGCCTTTCTAGTACATAAAGGGAGCTTATAAATGGGAGGAGGGGAGACTTTTTATATGGGCAGATCGCTACAGGACAAGGGGGAACAGCTTTAAACCAAAAGAGGGGAGATTTAGGTGGGATGTTAGACAGAGATTCTTTACCCAGAGGTGATGAGGTGCTGGCACTGCCCGGAGCTGTGGTATCCACCCCTGGAGGTGCCCAAGGCCATGGCTGGGCCCTGGACAGCCCGAGCTGTGGGGCAGTTAGCCCATGGCAGGGCGGGTGGAATCTGATGATGCTTAGAGTCCTTTCCCACCCGAGCTTTTCTATGAAAACAGCTGAATATGTGGTGCTTTTAATTGCAG
Seq C2 exon
GTCCCCATGGCGTTTAACGACACTTCATTTAGCTTCTCGGAGGACGAGTGGAAGAACTTGAACGAGTGGCAGAAAGAGCTTTACAGGCATATCATGAAGGGCAACTACGAGGCCGTGATCTCGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922:ENSGALT00000044711:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=54.9)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACCTGGAGGGCAGGAT
R:
GCCTCGTAGTTGCCCTTCATG
Band lengths:
342-2273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]