HsaINT0188390 @ hg19
Intron Retention
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148963426-148964036:+
Coord C1 exon
chr7:148963426-148963821
Coord A exon
chr7:148963822-148963909
Coord C2 exon
chr7:148963910-148964036
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TGCGACACTTATGGTTCCAGGTG
3' ss Score
6.88
Exon sequences
Seq C1 exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTAGCACCGGGACACCCTGGGGTGGGGGAGCTCGAGGGGCTGAGCCTGTGAGCGTGTGGGTGAGTGAGTGCGACACTTATGGTTCCAG
Seq C2 exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-ZNF783:NM_001195220:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGAGAATGTGGAGAAC
R:
TAGAGCTCCTTCTGCCAGTCC
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)