MmuINT0179867 @ mm9
Intron Retention
Gene
ENSMUSG00000079573 | Zfp783
Description
NA
Coordinates
chr6:47895428-47895961:+
Coord C1 exon
chr6:47895428-47895750
Coord A exon
chr6:47895751-47895881
Coord C2 exon
chr6:47895882-47895961
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
TGTATATTTCTCTGAATTAGAGT
3' ss Score
6.6
Exon sequences
Seq C1 exon
CCAAATGCAGAGAAGAGCTCATACCTCTATTCCATAGAAATCACACTGTGGACCGTGGTGCCTGCTGTTCAGGCCTTGGAGAAGAAAAGTGGATTCTTGCCTGGCCCGCTTGCTGACTCTGGAGGGATGCTCAGGGACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAGCCAGCTGGAGGGCAAGTTGGCCGTGCTGGGGACCCTGCCTCAGGAGTCTAGGCTGCTGCATGAAGAACCTCATGGGCAACTGGAACTTCTGGGTCCAGCGGCTTCCCCCTGGCAACAAGGGGGAGGTCCCCAAG
Seq A exon
GTAGCCTTTGGATACCCTGACTAGGAAGCTTAAGGGCCTGTGCCTGTAAGCATGTAGGTGAACAAGTGGGACATTGTGGTTTCAGGTGCCCCTGACCTTTGATGACATGGCTGTATATTTCTCTGAATTAG
Seq C2 exon
AGTGGGCCAAGCTGGAGGACTGGCAGAAGAGGCTCGACAAGCATGTGATGGGGGCAGCTATGAGATGCTCGTTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079573-Zfp783:NR_027963:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACAGCAGAGAAGAAGCT
R:
CATAGCTGCCCCCATCACATG
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: