BtaINT0166088 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002445 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr4:113141788-113142323:+
Coord C1 exon
chr4:113141788-113142111
Coord A exon
chr4:113142112-113142238
Coord C2 exon
chr4:113142239-113142323
Length
127 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TGGCCGTGTATTTCTCTGAGCCA
3' ss Score
-4.66
Exon sequences
Seq C1 exon
AATTCCTACCTCTACTCCACGGAAATCACGCTGTGGACGGTGGTGGCCGCCATCCAGGCCTTGGAAAAGAAGGTGGATTCCTGCCTGACCCGCCTGCTGACTCTGGAGGGGCGGACAGGGACGGCTGAGAAGAAGCTGGCCGACTGCGAGAAGACGGCCGTGGAGCTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGCGAGGTCCCCAGG
Seq A exon
GTAAGCCCTGGACACCGGGGGTGGGATAGCCCACGTTCCCTGCCCATCGGCGTGTGGGTGAGCCTGCGTGACCCTGTGGTTCCAGGTGCCCGTGACCTTTGATGACGTGGCCGTGTATTTCTCTGAG
Seq C2 exon
CCAGAGTGGGGCAAGCTGGACGAGTGGCAGAAGGAGCTGTACAAGCACGTGATGAGGGGCAACTACGAGATGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002445:ENSBTAT00000003175:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=73.1),PF0135222=KRAB=PU(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=FE(93.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGGACGGCTGAGAAGAA
R:
TGTACAGCTCCTTCTGCCACT
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]