MmuINT0179808 @ mm9
Intron Retention
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48033092-48033604:-
Coord C1 exon
chr6:48033305-48033604
Coord A exon
chr6:48033174-48033304
Coord C2 exon
chr6:48033092-48033173
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CCATGTATTTTTCTGATCAGGAG
3' ss Score
7.08
Exon sequences
Seq C1 exon
ATTTCTCCATGGACAATGGCAGCTACAATTCAGGCTATGGAGAGGAAGATTGAATCACAGGCTGCTCGACTGCTTTCTCTAGAAGGTCGAACTGGGATGGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAATATGGGCTGCTGCAGCGGCGGCTGGAAAATGTGGAGAATCTGCTACGCAACCGGAACTTCTGGATTCTTCGGCTTCCCCCAGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
GTAGCTTTTGGGAGCTCTGGGGTGGTGAGCCTGAGGGTCCATGCCTGAAAGTGTGTCGGTGAGCGAGCGTGACACTGTGGTTTCAGGTGCCTCTGACCTTTGATGATGTGGCCATGTATTTTTCTGATCAG
Seq C2 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691-Zfp746:NM_001163475:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(3.3=1.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAACTGGGATGGCAGAGAA
R:
TAGAGCTCCTTCTGCCAGTCC
Band lengths:
252-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: