HsaINT1047661 @ hg38
Intron Retention
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149493989-149494503:-
Coord C1 exon
chr7:149494204-149494503
Coord A exon
chr7:149494071-149494203
Coord C2 exon
chr7:149493989-149494070
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CCGTGTATTTCTCCGAGCAGGAG
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATTTCTCCGTGGACGATGGCAGCCACGATTCAGGCCATGGAGAGGAAGATTGAATCGCAGGCTGCTCGCCTGCTTTCCCTAGAAGGTCGAACCGGGATGGCCGAGAAGAAGCTGGCTGATTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGTCCCCTAAG
Seq A exon
GTAGCCCTGGGACGCCTTGGGGTGTGGGAGCCCAAGCGGCCAAACCCGTGAGCGTGTGGGTGAGCGAGTGTGACACTTGTGGTTCCAGGTGCCCGTGACCTTTGATGATGTGGCCGTGTATTTCTCCGAGCAG
Seq C2 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220:ENST00000340622:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(6.5=2.0)
A:
NA
C2:
PF0135222=KRAB=FE(87.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGATTGCGAGAAGACAG
R:
GTAGTTGCCCCTCATCACGTG
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains