HsaALTA1049626-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149493989-149494503:-
Coord C1 exon
chr7:149494204-149494503
Coord A exon
chr7:149494071-149494115
Coord C2 exon
chr7:149493989-149494070
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
TGTGACACTTGTGGTTCCAGGTG
3' ss Score
8.54
Exon sequences
Seq C1 exon
ATTTCTCCGTGGACGATGGCAGCCACGATTCAGGCCATGGAGAGGAAGATTGAATCGCAGGCTGCTCGCCTGCTTTCCCTAGAAGGTCGAACCGGGATGGCCGAGAAGAAGCTGGCTGATTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGTCCCCTAAG
Seq A exon
GTGCCCGTGACCTTTGATGATGTGGCCGTGTATTTCTCCGAGCAG
Seq C2 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-8-4,8-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(6.5=2.0)
A:
NA
C2:
PF0135222=KRAB=FE(87.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGTGGAGAACCTGCTG
R:
GTAGTTGCCCCTCATCACGTG
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains