HsaEX0074293 @ hg38
Exon Skipping
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149492859-149494503:-
Coord C1 exon
chr7:149494204-149494503
Coord A exon
chr7:149493989-149494115
Coord C2 exon
chr7:149492859-149492972
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGACACTTGTGGTTCCAGGTG
3' ss Score
8.54
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATTTCTCCGTGGACGATGGCAGCCACGATTCAGGCCATGGAGAGGAAGATTGAATCGCAGGCTGCTCGCCTGCTTTCCCTAGAAGGTCGAACCGGGATGGCCGAGAAGAAGCTGGCTGATTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGTCCCCTAAG
Seq A exon
GTGCCCGTGACCTTTGATGATGTGGCCGTGTATTTCTCCGAGCAGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq C2 exon
ACTACGCCATCTCCAAGCCCGAGGTCCTCTCCCAGATTGAACAAGGGAAGGAGCCCTGCAACTGGCGCCGCCCTGGCCCCAAGATTCCAGATGTTCCTGTGGACCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.071 C2=0.615
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(6.5=2.0)
A:
PF0135222=KRAB=FE(87.1=100)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCTGGCTGATTGCGA
R:
GGGCTCCTTCCCTTGTTCAAT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development