HsaINT1047662 @ hg38
Intron Retention
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149492859-149494070:-
Coord C1 exon
chr7:149493989-149494070
Coord A exon
chr7:149492973-149493988
Coord C2 exon
chr7:149492859-149492972
Length
1016 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AACCTTCTGTCTTTCCTCAGACT
3' ss Score
10.58
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq A exon
GTAAGGCCTGACACTCATTTCTCTGTTAAATGGGATTTTGCAAGTCCTCAGAATTCTCCCTCCACATAGTTGTTTTCATGTCAGTGTTATATAAATCACCAGAAACATTGTTGACCTTGCAAGTTGTTACCTTTTGTGAAGGATGAGCCCTGGGTGATGGAGTTAAAAGCTCCCTTCTCCCTGTGTTGAGTTTCCCAGAATGCCAGTCTGGGAACGGCGGTGGCTTCTCTCCTACGCAGGCCCGGGATGTGGACCTTTCTGTTCTTGCTGACTTGGAGCGGGGAAGGCCCCATCTGCTCTCAGATCCAGTATGTAATTGACTCACATTTGAGAAAGACTCTTTCCTTCAGCCTTCTCCTACAAACATGCGTGGCCCTTACGGCAACATGCCTCGAGGTCAGTGGAGAACATGGGCAGACGGTGCTGCTTGCAGCAGACATTTTCTTCATGCCTCAAAACTTTGCTTCCCTCAGCCCCTGGGGCTACTGCTCTTCTCCTTGTTTAATCCTGCCCAGGAAGGGCCTGGACTCTGTTTCTTCCTGGGCTGGTTTTCTCTTCCTAATGGTTTCTGTGTGACCCCGGAGCCGAGGGCAGTGAGACCTGTTAGAGAGGGCAGGAGCAGGTGCAGACGTGAGGTTGTTTCGTCAGCACAAGTGCACTGCTGTTTAACGTGCACGCTCTGTGGCAGTTTCTTCACCCCGGCACTGTGGACATTTGGGACCAGGTGATTCTGTGTGTCGGCGGCATCCTCTGCATTGTAGGATGTTGAGCAGCAGCCCTGGCCTCTCAGGGCATCTCCAGATGCCAGTCACCTCTCCCCCAGCCCTGGGCATGACAACCAGAATTGTCTCCAGACTTTGCCAGATGCCCCCAGGGAGCAAAATTGCCTGTGGTTGAGAGCTACTGCTTTGTGACAATCAAGAGATTTCATTTCTAGACCATTGTTGGTTTTCCGGGATGACTGTCCCCAGCTTTGACTGGAACGTGGCAAAAACTAACCTTCTGTCTTTCCTCAG
Seq C2 exon
ACTACGCCATCTCCAAGCCCGAGGTCCTCTCCCAGATTGAACAAGGGAAGGAGCCCTGCAACTGGCGCCGCCCTGGCCCCAAGATTCCAGATGTTCCTGTGGACCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220:ENST00000340622:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(87.1=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGGCAAGCTGGAGG
R:
CTGGGGTCCACAGGAACATCT
Band lengths:
191-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains