MmuINT0179809 @ mm9
Intron Retention
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48032153-48033173:-
Coord C1 exon
chr6:48033092-48033173
Coord A exon
chr6:48032267-48033091
Coord C2 exon
chr6:48032153-48032266
Length
825 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
AACCTCCTATCTTTCCTCAGACT
3' ss Score
9.42
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTCTCCCTGG
Seq A exon
GTAAGCATAGTATACACCTCTGTAAGGTGGGATTTTACGAGTCCCAGACCTCTTTGTGACATGGTTGTTGTCATGTCAGTGATGTGCAGACCCCTAGATAATCTGAGCAGGAGACTCCTCTCCCCCGACCTTCCTTTCTTGCCTCCTCATGCTGTTCAGTAGAGTCAGATATTCCCTTCTGCTTGACGGAGTAGCAGACCAAGGAAAGCGGTGACCTCTGTCCTCACTAGGCCCAGAGTACTGACATCTCCATTTTGGCTGAGACTGGAGTACAGGTGTGCTGGCAGCTCTGCACTGTATTTTTAATCAACTCCACTGCAGCAGAGGAATTGTTCTCTTATCATGGAGTGGGTGGCTTTTATGTGACACAGCACAGGGTCTGTGAGAATAAGAGTAGTAGACCTTGCCTTTCAAAGCAGATATTCTTTCTCTGCCCCAAAGCCCTACTGCCCCTGCCCCTGGAGCTACTGTTCTGAAAGACCCTCTTCATAGTCTTCCTTCCTGGACAAGAGTATTTGGTGCGATTCTGCTTTGCAGACATGCTGCTGCTGCTTAATGAGGCCTTGTCCAGCACCATGAGCTCTGTGGACAGATGAACAGTGGGTGGGGTCTTTTACTTGCATTGTTGAATGCGCAGGAGCATCTCTCCCACCCTCTGGACTCTACACAAGACTGTTCAAAGACTTTGAGCAGAATGCCTACCATTGACAACTGCTGTTCTGCATCAGTCAAGACATTTAGTTTCTAGGCTGTTAGTGATTTTACAAATGCCTGCCCCAGCTTCTGATGAGAATGTGGCAAGATTAACCTCCTATCTTTCCTCAG
Seq C2 exon
ACTATGCCATCTCCAAACCTGAGGTCCTCTCCCAGATTGAACAAGGCAAGGAGCCATGCACCTGGCGTCGCACTGGGCCCAAGGTCCCGGAGGTTCCTGTGGACCCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691-Zfp746:NM_001163475:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(90.0=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGGCAAGCTGGAGG
R:
GACTTGGGTCCACAGGAAC
Band lengths:
193-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: