GgaINT1030677 @ galGal4
Intron Retention
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:485033-486666:+
Coord C1 exon
chr2:485033-485159
Coord A exon
chr2:485160-486252
Coord C2 exon
chr2:486253-486666
Length
1093 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGTTCTTTGGCCCTGAGCAGACT
3' ss Score
2.75
Exon sequences
Seq C1 exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
Seq A exon
GTAAGGCACGGGCTCTGCTTCTCCCAGTGAACTTCCCTTCTGCGTAACTTGGGTTGTTTCTCTCTTGTTCAGTGGGGCTGGCTGCCCATAGCTTGCAGTATCTGGGCAGCCAGCCCCACTCATTTTCCATCCTTCCTGTTGTTATCAGTAAACAAAACCTGTAAGTGATAGGTAATATATAGTGGTAATAATTAATAGTAGCGATAATAATGCAAACAGCATCTGTTATTAAAATAAATACCCATATGTGATGCTGTTCTTAATGATTCAAGATGGTCAGGGAACCATCCTGATCTTCCAGCACAGTTCAGGAATTATCTAGGTGAAGTCTGACAATTGCATCTTGAACGACATTTTGTTTTCTGTCTTTTTAGCACTGATTTAAAGTGACAGGGATATTTGCACATGCCATGGTAAAGAACCAACTTAATCATGTTCAGTCCTTCTAAGGACATTTGACATGTTCTTGGATGGTTTGGGCTAGAAGATATTTCTTATCAGAAACTATTTCTGGGAAAAATTCTGTGGGTACCATCGCGAAAAGTAATACCAGATATAAGTAACAGGGCACAACTAGTAGTGTAGTCGTTCATGCAGTTACTGACATTGAGACTTCACTTTTCTTAGTAGAGACTTCATTTTTCTAGCAGTACCCTGTAGAAACAACAAACCTGTTCTTAAAATGGTCCATCTGATGTAGCCATCTCTATGGGGGAGGAATCTTTCTGTCCCTACCTCAGAACTAAACTAATCTGATAATAGTAGGCCAGACATCTTCAAATCACTGCTAATGTTGAGATTGGAGGAAAATGTTAAATTCAGAGCCTCTCCTTTAAGGTTTTAGGTCACTGTCTATTATTTAGATCTTTGCTGTACTTGAGCAAGAGCTGTGCTAATGAGTGAATCCCACCACAGGACCACTGTTCTCCCTTGTGTCGGTGCAGGTGAGAGCTCTGTGTCTGTCTGGGCTGCCTGCTAGCCTTTGGGGTTAGGGAAGAACGGTTACTCTGAAGTGTTGGACAATTTGCTACAGTAACAGCATAGGCAGTTCCTAACAAAACATGTTGTCCTCTGGTTCTTTGGCCCTGAGCAG
Seq C2 exon
ACTATGCTGTGTCCAAGCCTGACATCCTGTCTCGAATTGAGAGGGGTGAAGAGCTCTGTGTCAAAGACTGTTGGGAGCCCCCACAGACGCTCAACCGAGATGGTCCAGAATCCCCACGGACCATCCAGGATGGGCAGGAGCTCACACAGACACACAACACAGGCAGTGAGGAACCTCTTCAGGCACACATCCAAGACAATGAGGAGCCCATACAGGACTGCAGCAAAGACAGTGAGGAGCTGTTGAAGACATGCCTCAAAGATGGTCAGGAACCCACACAAACGTGTATCACAGACAGTCAGGATACCCCACAAACAGGCATCGAAGATCGTCAGGAGCCCTTGCAGGCACCAGAAGAGATGGACCAGATGGAGGAGGCTTTGGGAAAAGATGTTCGCGTGGAAGCTGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143:ENSGALT00000045404:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.820
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTACTTCAACGAGCAGG
R:
GGCATGTCTTCAACAGCTCCT
Band lengths:
357-1450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]