HsaINT0187124 @ hg19
Intron Retention
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:18373]
Coordinates
chr7:148863250-148864022:+
Coord C1 exon
chr7:148863250-148863376
Coord A exon
chr7:148863377-148863908
Coord C2 exon
chr7:148863909-148864022
Length
532 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTTCCTTTTTCCTCTCCTAGATT
3' ss Score
11.18
Exon sequences
Seq C1 exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
Seq A exon
GTGAGGCTGAGTTGACACCTTTTGAATGAAGTGACAGCAGCTCCAAGAGGGCTCAGAACAGTCCCTTTTCCTCCAGTGACCTCATTCTCACTCTGTCTTCACACACTTCAAATTCTGGTTTCAAGCCAAAATATGACCAATTAATGCTTGCTAACTAGGAATCATAATCTCTCTTTTTACCAAATTGTAGGACAGAGAATGAAGTTCAGGGTTATGGGTGTGACAGCTGGTGGTTTCCATGGGTATCCTTCACTTGGAAAGGAGCTTGACTTCTCCCCCTTGAGGCACACTGTCACTCTGAAAGCAGTGCTAACCTAGCACATGTGCTTTCCCCACACATTACATCTCCACTGCCTGCTTTCCTGAATAGATATCCACAGCTGAAGATGGATAGATGGGAAGAAGTGATATGAAATCTAAAAGAAATTCCCTGGCACTGTGACCACAAAGCTTCAGCTCAGCCTTGATGGCAATTAGTTGTCATCCTCATTTATCTCTTTGTAATACTCTCTCTTCCTTTTTCCTCTCCTAG
Seq C2 exon
ATTATGCTATAAATCAACCTGATGTCTTATCTCAGATTCAACCAGAAGGGGAACATAATACAGAGGACCAGGCAGGGCCAGAGGAAAGTGAGATTCCCACAGACCCCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024-ZNF398:NM_020781:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.880
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGCATTTGATGATGTCT
R:
CTTCACTGGGGTCTGTGGGAA
Band lengths:
238-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)