BtaINT0165206 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020448 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr4:113094981-113095738:+
Coord C1 exon
chr4:113094981-113095107
Coord A exon
chr4:113095108-113095618
Coord C2 exon
chr4:113095619-113095738
Length
511 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGCCTTCCACTTCACTCCAGACT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GTTCCAGTGACCTTTGTGGACATCGCTGTTTACTTCTCCGAGGACGAGTGGAAGAACCTGGACGAATGGCAGAAGGAGCTTTACAACAACCTGGTTAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq A exon
GTAAGTGTGCCTTTCGTCCCCCAGGCAAGCATCTCTGGAGTGAGGGGTGACATGCTTCTCAACCCAGGATGCACCCCTAGGCAAGGTGTTTCGTGTTTATACTTCATGGAAATTCAAGAGACAATGTGCTTCTCTGTTAGGAAGTTAGAGCAATTGATAAGAGTATGGAAAGTACAGACCCAGGAACAGGGCCTGTTACTACAGAACTGAACACTCTGCTGCTACTATGCTGGAAATACAGCCCAACAGCATCCCTAGGCGCTACCTCCCAGCAGCCCTGGAGAAGCCACTGGTCTCTCTGCTGCTATTTCTGGGTTCCAGAACCCAGCTAGTTCTCCACCAGGAACTGGAGCATCCATTGACTTAGACTCTCCTGAGAGATGACCTGACATAACGGGCCACCCGCTGAGAGGGGCGCCAGGGTACGGGAGGGGAGGGCTCCCCATCGCTGTTGATGGAGACCCTTTGGTGAACGTCCCTCAGCCCTTCCTTGCCTTCCACTTCACTCCAG
Seq C2 exon
ACTCGGAGGGACCCGTGTCCAAGCCGGAAGCCCCATCTCAGGCTGAGCCCCGGGAAGAGCCCTGCGTGTGGGAGCAGCGTGACCCAGAAGAGAGAGAGATCCTCATGGATCCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020448:ENSBTAT00000027249:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.996
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGTGACCTTTGTGGACA
R:
CTGTGTCTGGATCCATGAGG
Band lengths:
247-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]