MmuINT0178922 @ mm9
Intron Retention
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47840065-47840722:+
Coord C1 exon
chr6:47840065-47840191
Coord A exon
chr6:47840192-47840602
Coord C2 exon
chr6:47840603-47840722
Length
411 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCTCTCCATCTCATTCACAGACA
3' ss Score
9.14
Exon sequences
Seq C1 exon
GTCCCGGTGACCTTCGTCGACATTGCTGTCTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq A exon
GTAAGGGTTCTCCCCTCCACTGGCGAGGGTTCTCTGCTGAGAGCTTCAAGGTGCAAAGGAGTCTGATGGAAAGTAACAGGGAACGTAGGATAGGATGAATATTAAAGGGTGTCAGCTGAGCCGTCACTGTGGTAGTCTATGCGGCACTACCATTATTCTAAAATACTGTAAAATATCAAGTTTATACCTCTGTGGGTTGTATCCTAACAGTTCAGGGTCAACCATGGACTCTGTGCTCTTGACTCTCAGAAAGAGGCCTGGGTTTCTGTTGGCCTGCTTTCAAGATTCCTTCTGCACATAATGGCTGCCATGCTGTGGGACATTGGTAACTGAGAGCCCTGCTCTATCACCTTGATCTGAATTCACTTGCAACTACAACCCTTCCCCTCCTTCTCTCCATCTCATTCACAG
Seq C2 exon
ACACAGATGGCCCAGTGTCCAAGCCAGACCCTCCGGTCCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCCGAAGAGAGAGAAATCCCAGTGACTGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-Zfp282:NM_146175:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGGTGACCTTCGTCG
R:
TGTGTCTGCAGTCACTGGGAT
Band lengths:
246-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: