GgaINT0090909 @ galGal3
Intron Retention
Gene
ENSGALG00000004819 | ZNF767
Description
NA
Coordinates
chr2:416907-417661:+
Coord C1 exon
chr2:416907-417033
Coord A exon
chr2:417034-417562
Coord C2 exon
chr2:417563-417661
Length
529 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
ACGTTTCTGTTCCTCAACAGATT
3' ss Score
10.9
Exon sequences
Seq C1 exon
GGCCCGGAGGCGTCTGAAAGTGAAACTGCTTGCTTTGCTGAGCAAGAGTGGGAGAACCTGGAGGAATGGCAGAAGGAGCTGTACAGGAACATGCTGAGAGGGAACAGTGAATCTCTGAACTCTCTGG
Seq A exon
GTAAATAACACTTTTAAAGTCAGTTCTTGATGCTTCTGGGTTAGCTGTCCTGGGGAACTTTTTCCTGCGCTCAGGAACCAAAGTTGTAGAAGCACGGAGAAGTCTGTGCCCGCTGCCAATTTAGAGCACAGCTCACATTGCATCCAGTGCCTCAGTGTCCAGCACTCAGTGGACTGGGCACTGGCTGCTGACTCTCCCAGAGCCCTGCTGGGAGGGCCTCCCAAGCGCAGCCTGCCAGCCCCTTCTCTCAGGGCTGTGGGTGTTTTTGGGGCTGGGAAGGAGTTGGCTGCCCGAGGCCATCTGCCGGTGGGCTGTGCAGTGGGCTCTCGCTGAATGGTGTGTTTTGGCCAATGGAGCTGTTTTGGGGTATGCAGCTGCTGCCAGTATTGTTTGCAGAAGTGCGTTCCTCCCCATGATTACTGCAGGCTTGGCTTACCCCTGCAGGCACCTCATTCCCACTCCTGTCACCTGCAGCAATGAGGGCAGTTTGATGCAGCACGAAAGCATTAACGTTTCTGTTCCTCAACAG
Seq C2 exon
ATTATTCAGTCTCCAGATCTGACTTGTCCCAGCTTCAGAGAGGAGAAGCGCCCTGCAGTGAGGTGACCTCAGCACAGAAGGAGGTTCCTACAGAACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819:ENSGALT00000039361:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.626
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=81.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGCGTCTGAAAGTGAAA
R:
AACCTCCTTCTGTGCTGAGGT
Band lengths:
209-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]