BtaINT0165046 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000389 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr4:113128472-113129652:+
Coord C1 exon
chr4:113128472-113128598
Coord A exon
chr4:113128599-113129562
Coord C2 exon
chr4:113129563-113129652
Length
964 bp
Sequences
Splice sites
5' ss Seq
TGAGTAGGT
5' ss Score
3.27
3' ss Seq
CTGTGCCCTTTCCAACCCAGAGG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTGTCCAGGTCACTTGAAAATGATGGCGTCTGCTTTTCAGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTATGCCAACGTGATGAAGAGCAACTATGAGACTCTGGTCTCTCTGA
Seq A exon
GTAGGTAGCGGTTTCCTCCCCGGACCTTGCCCTCAGACGTCCTGCAATTCCTGACCGAGGCGTTTGTGACCCAGGCCACACCTGGGATTCTCGTGGCTGTGGGTCCTCTCTTGGCCTCCGCCGGGTTGAGTAATGGGAATCTCCAGGCCCTCAGTTTAGGAAGACTCTTGGAAAGGTTTTGTATTCATGTAGTCAGTCCTTGATAGTGTTTATACTAATAGATAAGATGTCATCATGTGCATTAGAGTGTAACACAGCTAGGATACCTCAAGCTGGTTTTAATATTTAGGACGGCTTGACAAGAAATCCTTTGTTACCTGGGATGGGCAGGCAGCAGGGACTCACCAAACAATGTTTCTTGGCATTTTCCTGGAATTAACAGCCAGTCCTGTGGTTTCAAAGTTCATACTGTGTTTATTAGAAGTGCTGCTTGATAGGTAAAATAATAAACGCATTTTGTTTGGTTCTAAACTCCTTTAGAACCGAGGTCCGTGGAGGCTTGTCCAGAAGGCCGCTGTGACCAGAGCAGAGGGAGGGAGAGGGAAGGGGCAAATGGTTAGAGAGGAGACTGTGACCTTGGCTGGGTCACAGGTGCTGGTGGCTGTTGCCTTGTCTGTCCCGGTGGGGACAGCAGTCCTGACCTTGCCTTGCAGCGCTGTGGCCCAGATGAAGTTAGACCCCTGGAAAGGAGCCCCCGACCGTGGGAGGTGGGGGTGGTGGTGGGAGAAAAACAGGGAGCTCTAGGGCCTGGCCCCCAATGGCTGAGAAGGAGCGTGAAGACAGCTGTTAGCCGAGTGGCTCCTTCAAATCGGCCATAATTTTCTGAATTGTCTGAAACTGCTCAGGGAAAGTGACAGTGAATCTTCTGAAGTTTTACCATCAGCTCCTTGACCTCGGTCGCCTTGTTCACTGGCAAATGACCAGTCCTGTCTTCTGGGCTCACACTGTGCCCTTTCCAACCCAG
Seq C2 exon
AGGTGCTTGGCCAGCCTGAAGGAGAAGTGGAGTTGGGTGCAGAGATGCCGGGTGACTTGGAGGAGGAAGAGTCTCGTGGTGTCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000389:ENSBTAT00000000499:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.774
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=90.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCACTTGAAAATGATGGCG
R:
GGACACCACGAGACTCTTCCT
Band lengths:
206-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]