RnoINT0167859 @ rn6
Intron Retention
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77598674-77600664:+
Coord C1 exon
chr4:77598674-77598800
Coord A exon
chr4:77598801-77600583
Coord C2 exon
chr4:77600584-77600664
Length
1783 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TCTGTCTTTTTCTAACCCAGAGG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTGTCCGGGCCCCTTGAGAATGATGGGGTCTGTTTCTCAGAACAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTCTCTCTAA
Seq A exon
GTGAGTGAAAGTTTTCTCCCTAGAATTCTCTCAGAGCCCTCCTGACTCCACATGTGACTGCCTGGCTCTCATCCTCTGAATCCTCTGCTGAGCTGAGGACTGACATTGCAGGTTCTCTCACCTGCAGAGACATGAAACTGTCCCAGGGACCAGTCTTTTGTAGTTCTTTTCTGGTAACACAATGACTTCTTAAGATTATTTGGATATTATTGTTAAAGTATAATATAGGTTTTTAATAACATCTCTAGGAAGTATTTTATTAGTTACTTTTGTATTGCTGTATAAGAAACTATGACCAAGGCAACTTAGAGAAGAAAAGATTTATTTGGGGTTTATGGTTTCAAGGGTTAGCGTCCTTGATAGCCAAGCAGAGATAGCAGGTGGCCAGTGGCTAGAACAACCCTGAGTTCATATCTTGAACCTTGAGCAGGATGCACAGAGGACTAACTCAAATTAGCCTTGAGACTTTTGAAATCTTAAAGCCTGCCCTCATTGAGAAGCCACCTCTAATAAGGCCACACCTCCTATTTCCAAACAGTTCTACCAACTGGGGACCAAGTTTTCAAACATATGAGCCTATGGGGGCCATTCTCCTTCAAACCACCACGTGTATAATGTACCTTTGTATTTTGAGACAGAATTTCTATGTATCCTTGGCTGCCCTAGAAAATGCTATATAAATAGGCTGGCTTTGAACTCTTAGAGATCCTCATGTCTCAGTCTCTTGAGTGCTGGTACCAACGGTATATACCACACCACTACGTCCAGCTAATGTGCTGTTTTTAATATGTAAGATTGTTTGATAAGAAAACTTAGGAACTGTTAAGGTGGCTCAGTGGATAGAAGTGCTTTCTATACAAGCCTGATAACCTGCATTCAATCCTTGGAACCCATGAGGGGAGGGGACAACTGACTCCTTAAGTTGCTCTGTGCCTCCACATGTGCACTGGTACAGGTGTACCCAGACTCTTATGTAGCATATACTTACACATAGAAATAATAAAATAAAATGAAAATGTAAAGGAATTTGAATCTTGAGATGAAACATGCAGCACAAGCTGAGAAAACCTTTTTCTTGGGAATTAGCCAGAGTCATCACCAGCCACTGTGGTCTGCACATTGTTACTAGAATAGTAGCACTGTGTGTGGAAGTGTTTTCTATAAAACTTACTAATGCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAACAAAAAAACAAAAAACTTACTAATGCATACTATATAACAAATGTATATTTTTCTTCTAAGATAAATTCTTTTCAAATGTGGGTCCTTGCAGAAATACCAAGGAGGCCACTGGCTAGACCACAGTGAGGGCAAGGGAAGTCAGGGTGGGTCAGAGGGGTGGCCATGTTACCTCAGATGGGTTCCATGCTCTCTTTGAGACTGTTGCCTTGTGTCGCAGGGCCTCCCTCACCTGGCAGTGCCTCAGCAAGAATAGAATTAGGCACTGTGGAAGGAATCCTTGGCAAAACTTGAGTTGTGTGGGCAGAGGTGGTGTGCTAGGTAGGCAGTGGCACCTGAGCCTAGTTGGCCTAGTGAAGGAGCCGCAGAGCAGCAGCTTGGCAATCCACTGACATGGGGAAAGTGACAGTAACATTAGCTTTTATATCTTTTAGCTGTTAGTATCGATTTGCTGACATTGTTTGTTCATCGGCTTCTGACCAGCATGCAGTAAGTTTGTATTCTGCGTTTACACTCTGTCTTTTTCTAACCCAG
Seq C2 exon
AGGTCCTTGGCCAGCCAGAGGAAGAAGTGGAGTTGGGCGCAGAGATGGTGGGTGACTTGGTGGAAGAAGGTACCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711:ENSRNOT00000009054:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.607
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=86.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGGCCCCTTGAGAATG
R:
GGTACCTTCTTCCACCAAGTCAC
Band lengths:
198-1981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]