RnoINT0167994 @ rn6
Intron Retention
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77565961-77566762:+
Coord C1 exon
chr4:77565961-77566087
Coord A exon
chr4:77566088-77566642
Coord C2 exon
chr4:77566643-77566762
Length
555 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCTCTCTATCTCATTCACAGACA
3' ss Score
9.6
Exon sequences
Seq C1 exon
GTCCCAGTGACCTTCGTCGACATTGCTGTTTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq A exon
GTAAGGGTACTCCCCTCCATTGGCGAGGGCTCTCTGCCGAGAGCTTCAGGATGCAAAGGGACCTGATGGGGAGTAACATGGAACTGACAATAGGATGACTGTCAAAGGGTGGCATCGCTGTGGCAGTCTAGACAGCACTACCACCATTATTCTAGAATACTGTAAAGCATCAAGTTTATACCTCCGTGCGCTGTATCCTCACAGATCGGGGTCAACCATGGACTGTGCTCTTGACTCTCACAAAGAGCCTGGGTTTCTGTTACCTTGCTTTCAAGAGTCTTTTTTTTTTTTTTAATTTTATTTATCTAATGTATATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTCAAGAGTCTTTCTGTACATAATGGCTGCTGTGCTGTGGGTACTTGGTAACTGAGAGCCCTGCTCCATCACCTTGATCTGAATTTACATGTCAACCTCATACAACCCCTTTCCCCTCCTTCTCTCTATCTCATTCACAG
Seq C2 exon
ACACGGATGGCCCAGTGTCCAAGCCAGATGCTCCAGTGCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCTGAAGAGAGAGAGATCCCAGGGACTGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981:ENSRNOT00000037248:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGTGACCTTCGTCGAC
R:
CTGTGTCTGCAGTCCCTGGG
Band lengths:
246-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]