GgaEX0028409 @ galGal4
Exon Skipping
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:485033-486666:+
Coord C1 exon
chr2:485033-485159
Coord A exon
chr2:486023-486103
Coord C2 exon
chr2:486253-486666
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGTCACTGTCTATTATTTAGATC
3' ss Score
5.33
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
Seq A exon
ATCTTTGCTGTACTTGAGCAAGAGCTGTGCTAATGAGTGAATCCCACCACAGGACCACTGTTCTCCCTTGTGTCGGTGCAG
Seq C2 exon
ACTATGCTGTGTCCAAGCCTGACATCCTGTCTCGAATTGAGAGGGGTGAAGAGCTCTGTGTCAAAGACTGTTGGGAGCCCCCACAGACGCTCAACCGAGATGGTCCAGAATCCCCACGGACCATCCAGGATGGGCAGGAGCTCACACAGACACACAACACAGGCAGTGAGGAACCTCTTCAGGCACACATCCAAGACAATGAGGAGCCCATACAGGACTGCAGCAAAGACAGTGAGGAGCTGTTGAAGACATGCCTCAAAGATGGTCAGGAACCCACACAAACGTGTATCACAGACAGTCAGGATACCCCACAAACAGGCATCGAAGATCGTCAGGAGCCCTTGCAGGCACCAGAAGAGATGGACCAGATGGAGGAGGCTTTGGGAAAAGATGTTCGCGTGGAAGCTGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.820
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSGALT00000045404fB3532
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTACTTCAACGAGCAGG
R:
GGGCTCCCAACAGTCTTTGAC
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]